+ set -o Current option settings allexport on bgnice off braceexpand on clobber on emacs off errexit off exec on glob on globstar off gmacs off histexpand off ignoreeof off interactive off keyword off letoctal off log on login_shell off markdirs off monitor off multiline off notify off pipefail off privileged off rc off restricted off showme off trackall on unset off verbose off vi off viraw on xtrace on + INITIAL_DATE=2015061000 + export INITIAL_DATE + FIRST_FILTER_DATE=2015061001 + export FIRST_FILTER_DATE + FIRST_DART_INFLATE_DATE=2015061001 + export FIRST_DART_INFLATE_DATE + FIRST_EMISS_INV_DATE=2015061001 + export FIRST_EMISS_INV_DATE + CYCLE_STR_DATE=2015061000 + export CYCLE_STR_DATE + CYCLE_END_DATE=2015061300 + export CYCLE_END_DATE + CYCLE_DATE=2015061000 + export CYCLE_DATE + NL_FAC_OBS_ERROR_MOPITT=1.00 + export NL_FAC_OBS_ERROR_MOPITT + NL_FAC_OBS_ERROR_IASI=1.00 + export NL_FAC_OBS_ERROR_IASI + RETRIEVAL_TYPE_MOPITT=RETR + export RETRIEVAL_TYPE_MOPITT + RETRIEVAL_TYPE_IASI=RAWR + export RETRIEVAL_TYPE_IASI + PERT_CHEM_GENER=true + export PERT_CHEM_GENER + USE_LOG=false + export USE_LOG + [[ false == true ]] + CO_MIN=1.e-4 + export CO_MIN + CO_MAX=NULL + export CO_MAX + O3_MIN=0. + export O3_MIN + O3_MAX=NULL + export O3_MAX + USE_LOG_CO_LOGIC=.false. + export USE_LOG_CO_LOGIC + USE_LOG_O3_LOGIC=.false. + export USE_LOG_O3_LOGIC + NL_USE_CPSR_CO_TRUNC=.false. + export NL_USE_CPSR_CO_TRUNC + NL_CPSR_CO_TRUNC_LIM=4 + export NL_CPSR_CO_TRUNC_LIM + NL_USE_CPSR_O3_TRUNC=.false. + export NL_USE_CPSR_O3_TRUNC + NL_CPSR_O3_TRUNC_LIM=4 + export NL_CPSR_O3_TRUNC_LIM + NL_AIRNOW_O3_VLOC=0 + export NL_AIRNOW_O3_VLOC + NL_TOLNET_O3_VLOC=0 + export NL_TOLNET_O3_VLOC + VARLOC=.true. + export VARLOC + INDEP_CHEM_ASIM=.false. + export INDEP_CHEM_ASIM + ADD_EMISS=.false. + export ADD_EMISS + EMISS_DAMP_CYCLE=0.5 + export EMISS_DAMP_CYCLE + EMISS_DAMP_INTRA_CYCLE=0.5 + export EMISS_DAMP_INTRA_CYCLE + BAND_ISO_VAL_CO=.09 + RUN_FINE_SCALE=false + export RUN_FINE_SCALE + RUN_FINE_SCALE_RESTART=false + export RUN_FINE_SCALE_RESTART + RESTART_DATE=2014072312 + export RESTART_DATE + [[ false == true ]] + RUN_SPECIAL_FORECAST=false + export RUN_SPECIAL_FORECAST + NUM_SPECIAL_FORECAST=1 + export NUM_SPECIAL_FORECAST + SPECIAL_FORECAST_FAC=1. + export SPECIAL_FORECAST_FAC + SPECIAL_FORECAST_FAC=1./2. + export SPECIAL_FORECAST_FAC + SPECIAL_FORECAST_FAC=2./3. + export SPECIAL_FORECAST_FAC + SPECIAL_FORECAST_MEM[1]=5 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[2]=18 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[3]=22 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[4]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[5]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[6]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[7]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[8]=20 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[9]=21 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[10]=19 + export SPECIAL_FORECAST_MEM + PROJ_NUMBER=P93300612 + export PROJ_NUMBER + GENERAL_JOB_CLASS=normal+ + export GENERAL_JOB_CLASS + GENERAL_TIME_LIMIT=01:40:00 + export GENERAL_TIME_LIMIT + GENERAL_NODES=1 + export GENERAL_NODES + GENERAL_TASKS=1 + export GENERAL_TASKS + WRFDA_JOB_CLASS=normal+ + export WRFDA_JOB_CLASS + WRFDA_TIME_LIMIT=01:05:00 + export WRFDA_TIME_LIMIT + WRFDA_NODES=1 + export WRFDA_NODES + WRFDA_TASKS=1 + export WRFDA_TASKS + SINGLE_JOB_CLASS=normal+ + export SINGLE_JOB_CLASS + SINGLE_TIME_LIMIT=01:05:00 + export SINGLE_TIME_LIMIT + SINGLE_NODES=1 + export SINGLE_NODES + SINGLE_TASKS=1 + export SINGLE_TASKS + BIO_JOB_CLASS=normal+ + export BIO_JOB_CLASS + BIO_TIME_LIMIT=01:20:00 + export BIO_TIME_LIMIT + BIO_NODES=1 + export BIO_NODES + BIO_TASKS=1 + export BIO_TASKS + FILTER_JOB_CLASS=normal+ + export FILTER_JOB_CLASS + FILTER_TIME_LIMIT=03:30:00 + export FILTER_TIME_LIMIT + FILTER_NODES=2-4 + export FILTER_NODES + FILTER_TASKS=48 + export FILTER_TASKS + WRFCHEM_JOB_CLASS=medium+ + export WRFCHEM_JOB_CLASS + WRFCHEM_TIME_LIMIT=16:00:00 + export WRFCHEM_TIME_LIMIT + WRFCHEM_NODES=2-4 + export WRFCHEM_NODES + WRFCHEM_TASKS=48 + export WRFCHEM_TASKS + RUN_INTERPOLATE=false + export RUN_INTERPOLATE + CYCLE_PERIOD=1 + export CYCLE_PERIOD + FCST_PERIOD=1 + export FCST_PERIOD + ASIM_WINDOW=30m + export ASIM_WINDOW + MET_INTERVAL_HR=1 + export MET_INTERVAL_HR + INTERVAL_SECONDS=3600 + export INTERVAL_SECONDS + HISTORY_INTERVAL_HR=1 + export HISTORY_INTERVAL_HR + (( HISTORY_INTERVAL_MIN = 1 * 60 )) + NL_DEBUG_LEVEL=200 + export NL_DEBUG_LEVEL + WPS_VER=wrfchem3_6_1_m_debug/WPS + export WPS_VER + WPS_GEOG_VER=GEOG_DATA + export WPS_GEOG_VER + WRFDA_VER=wrfchem3_6_1_m_debug/WRFDA + export WRFDA_VER + WRF_VER=wrf3_6_1_m_debug/WRFV3 + export WRF_VER + WRFCHEM_VER=wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_VER + DART_VER=wrf-chem.r13172 + export DART_VER + SCRATCH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export SCRATCH_DIR + MODEL_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI + export MODEL_DIR + INPUT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export INPUT_DATA_DIR + SCRIPT_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + export SCRIPT_DIR + EXPERIMENT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export EXPERIMENT_DIR + RUN_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour + export RUN_DIR + WPS_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS + export WPS_DIR + WPS_GEOG_DIR=/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7 + export WPS_GEOG_DIR + WRFCHEM_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_DIR + WRFDA_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA + export WRFDA_DIR + DART_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172 + export DART_DIR + BUILD_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da + export BUILD_DIR + WRF_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3 + export WRF_DIR + HYBRID_SCRIPTS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts + export HYBRID_SCRIPTS_DIR + ADJUST_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_EMISS_INV + export ADJUST_EMISS_DIR + WES_COLDENS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS + export WES_COLDENS_DIR + MEGAN_BIO_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO + export MEGAN_BIO_DIR + FINN_FIRE_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE + export FINN_FIRE_DIR + EXPERIMENT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA + export EXPERIMENT_DATA_DIR + MOZBC_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts + export MOZBC_DATA_DIR + EXPERIMENT_STATIC_FILES=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files + export EXPERIMENT_STATIC_FILES + EXPERIMENT_WRFCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export EXPERIMENT_WRFCHEMI_DIR + EXPERIMENT_WRFFIRECHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions + export EXPERIMENT_WRFFIRECHEMI_DIR + EXPERIMENT_WRFBIOCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions + export EXPERIMENT_WRFBIOCHEMI_DIR + EXPERIMENT_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens + export EXPERIMENT_COLDENS_DIR + EXPERIMENT_PREPBUFR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data + export EXPERIMENT_PREPBUFR_DIR + EXPERIMENT_AIRNOW_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data + export EXPERIMENT_AIRNOW_DIR + EXPERIMENT_TOLNET_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data + export EXPERIMENT_TOLNET_DIR + EXPERIMENT_GFS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts + export EXPERIMENT_GFS_DIR + EXPERIMENT_DUST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/dust_fields + export EXPERIMENT_DUST_DIR + EXPERIMENT_HIST_IO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files + export EXPERIMENT_HIST_IO_DIR + VTABLE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables + export VTABLE_DIR + BE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run + export BE_DIR + PERT_CHEM_INPUT_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT + export PERT_CHEM_INPUT_DIR + PERT_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT + export PERT_CHEM_EMISS_DIR + RUN_BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_BAND_DEPTH + export RUN_BAND_DEPTH_DIR + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + RUN_GEOGRID=false + export RUN_GEOGRID + RUN_UNGRIB=false + export RUN_UNGRIB + RUN_METGRID=false + export RUN_METGRID + GEOGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/geogrid + export GEOGRID_DIR + UNGRIB_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/ungrib + export UNGRIB_DIR + METGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid + export METGRID_DIR + MAX_DOMAINS=02 + export MAX_DOMAINS + CR_DOMAIN=01 + export CR_DOMAIN + FR_DOMAIN=02 + export FR_DOMAIN + NNXP_CR=195 + export NNXP_CR + NNYP_CR=167 + export NNYP_CR + NNZP_CR=36 + export NNZP_CR + NNXP_FR=255 + export NNXP_FR + NNYP_FR=228 + export NNYP_FR + NNZP_FR=36 + export NNZP_FR + (( NNXP_STAG_CR=195+1 )) + (( NNYP_STAG_CR=167+1 )) + (( NNZP_STAG_CR=36+1 )) + (( NNXP_STAG_FR=255+1 )) + (( NNYP_STAG_FR=228+1 )) + (( NNZP_STAG_FR=36+1 )) + ISTR_CR=1 + export ISTR_CR + JSTR_CR=1 + export JSTR_CR + ISTR_FR=80 + export ISTR_FR + JSTR_FR=45 + export JSTR_FR + DX_CR=27000 + export DX_CR + DX_FR=9000 + export DX_FR + (( LBC_END=6 )) + LBC_FREQ=6 + export LBC_FREQ + LBC_START=0 + export LBC_START + START_DATE=2015061000 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061300 6 + 2> /dev/null + END_DATE=2015061306 + export END_DATE + echo 2015061000 + cut -c1-4 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061000 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061000 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061000 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061000 + START_HOUR=00 + export START_HOUR + START_FILE_DATE=2015-06-10_00:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061306 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061306 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061306 + END_DAY=13 + export END_DAY + cut -c9-10 + echo 2015061306 + END_HOUR=06 + export END_HOUR + END_FILE_DATE=2015-06-13_06:00:00 + export END_FILE_DATE + FG_TYPE=GFS + export FG_TYPE + GRIB_PART1=gfs.0p25. + export GRIB_PART1 + GRIB_PART2=.g2.tar + export GRIB_PART2 + SINGLE_FILE=false + export SINGLE_FILE + HOR_SCALE=1500 + export HOR_SCALE + VTABLE_TYPE=GFS + export VTABLE_TYPE + METGRID_TABLE_TYPE=ARW + export METGRID_TABLE_TYPE + NL_WRF_CORE=$'\'ARW\'' + export NL_WRF_CORE + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=00,00 + export NL_START_HOUR + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=13,13 + export NL_END_DAY + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_IO_FORM_GEOGRID=2 + export NL_IO_FORM_GEOGRID + NL_OPT_OUTPUT_FROM_GEOGRID_PATH=$'\'/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/geogrid\'' + export NL_OPT_OUTPUT_FROM_GEOGRID_PATH + NL_ACTIVE_GRID=.true.,.true. + export NL_ACTIVE_GRID + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_GEOG_DATA_RES=$'\'10s\',\'10s\'' + export NL_GEOG_DATA_RES + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_MAP_PROJ=$'\'lambert\'' + export NL_MAP_PROJ + NL_REF_LAT=42.83 + export NL_REF_LAT + NL_REF_LON=-92.03 + export NL_REF_LON + NL_STAND_LON=-98.0 + export NL_STAND_LON + NL_TRUELAT1=30.0 + export NL_TRUELAT1 + NL_TRUELAT2=60.0 + export NL_TRUELAT2 + NL_GEOG_DATA_PATH=$'\'/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7\'' + export NL_GEOG_DATA_PATH + NL_OPT_GEOGRID_TBL_PATH=$'\'/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid\'' + export NL_OPT_GEOGRID_TBL_PATH + NL_OUT_FORMAT=$'\'WPS\'' + export NL_OUT_FORMAT + NL_IO_FORM_METGRID=2 + export NL_IO_FORM_METGRID + [[ ! -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour + [[ false == true ]] + [[ false == true ]] + [[ false == true ]] + [[ 2015061000 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061000 + export DATE + cut -c1-4 + echo 2015061000 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061000 + YY=15 + export YY + cut -c5-6 + echo 2015061000 + MM=06 + export MM + cut -c7-8 + echo 2015061000 + DD=10 + export DD + cut -c9-10 + echo 2015061000 + HH=00 + export HH + DATE_SHORT=15061000 + export DATE_SHORT + FILE_DATE=2015-06-10_00:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -1 + 2> /dev/null + PAST_DATE=2015060923 + export PAST_DATE + cut -c1-4 + echo 2015060923 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015060923 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015060923 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015060923 + PAST_DD=09 + export PAST_DD + cut -c9-10 + echo 2015060923 + PAST_HH=23 + export PAST_HH + PAST_FILE_DATE=2015-06-09_23:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + NEXT_DATE=2015061001 + export NEXT_DATE + cut -c1-4 + echo 2015061001 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061001 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061001 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061001 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061001 + NEXT_HH=01 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_01:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=00 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 00 + 0 )) + [[ 00 -eq 0 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -1 + 2> /dev/null + TMP_DATE=2015060923 + export TMP_DATE + cut -c1-4 + echo 2015060923 + TMP_YYYY=2015 + export TMP_YYYY + cut -c3-4 + echo 2015060923 + TMP_YY=15 + export TMP_YY + cut -c5-6 + echo 2015060923 + TMP_MM=06 + export TMP_MM + cut -c7-8 + echo 2015060923 + TMP_DD=09 + export TMP_DD + cut -c9-10 + echo 2015060923 + TMP_HH=23 + export TMP_HH + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=09 + export D_DD + D_HH=24 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 09 + 0 )) + (( DD_HH = 24 + 0 )) + D_DATE=2015060924 + export D_DATE + echo 2015061000 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 0 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=0 + export SEC_GREG + echo 2015061001 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 3600 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=3600 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -30m + 2> /dev/null + ASIM_MIN_DATE=201506092330 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506092330 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506092330 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506092330 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506092330 + ASIM_MIN_DD=09 + export ASIM_MIN_DD + cut -c9-10 + echo 201506092330 + ASIM_MIN_HH=23 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100030 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100030 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100030 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100030 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100030 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100030 + ASIM_MAX_HH=00 + export ASIM_MAX_HH + echo 201506092330 201506092330 + echo 201506092330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151369 84600 + ASIM_MIN_DAY_GREG=151369 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=84600 + export ASIM_MIN_SEC_GREG + echo 201506100030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 1800 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=1800 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061000 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=true + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061000 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + END_DATE=2015061001 + export END_DATE + cut -c1-4 + echo 2015061000 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061000 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061000 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061000 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061000 + START_HOUR=00 + export START_HOUR + START_FILE_DATE=2015-06-10_00:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061001 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061001 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061001 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061001 + END_HOUR=01 + export END_HOUR + END_FILE_DATE=2015-06-10_01:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015060923/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=00,00 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=01,01 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-09_23:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_00:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506092330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151369 84600 + (( temp[1]=84600+1 )) + NL_FIRST_OBS_DAYS=151369 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=84601 + export NL_FIRST_OBS_SECONDS + echo 201506100030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 1800 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=1800 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061000 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=0 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=0 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=3600 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -30m + 2> /dev/null + ASIM_DATE_MIN=201506092330 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100030 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506092330 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506092330 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506092330 + ASIM_MN_DD=09 + export ASIM_MN_DD + cut -c9-10 + echo 201506092330 + ASIM_MN_HH=23 + export ASIM_MN_HH + cut -c1-4 + echo 201506100030 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100030 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100030 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100030 + ASIM_MX_HH=00 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + E_DATE=2015061001 + export E_DATE + cut -c1-4 + echo 2015061001 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061001 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061001 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061001 + E_HH=01 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061000 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 2 + 2> /dev/null + P_END_DATE=2015061002 + export P_END_DATE + [[ 2015061000 -le 2015061002 ]] + cut -c1-4 + echo 2015061000 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061000 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061000 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061000 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-10_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_DATE=2015061001 + export P_DATE + [[ 2015061001 -le 2015061002 ]] + cut -c1-4 + echo 2015061001 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061001 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061001 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061001 + P_HH=01 + export P_HH + P_FILE_DATE=2015-06-10_01:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_01:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_01:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061002 ]] + cut -c1-4 + echo 2015061002 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_02:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061002 ]] + P_DATE=2015061000 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_END_DATE=2015061001 + export P_END_DATE + [[ 2015061000 -le 2015061001 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061000 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + cut -c1-4 + echo 2015061000 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061000 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061000 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061000 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061001 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061001 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061001 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061001 + L_END_HOUR=01 + export L_END_HOUR + cut -c1-4 + echo 2015061000 + cut -c1-4 + echo 2015061000 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061000 + cut -c5-6 + echo 2015061000 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061000 + cut -c7-8 + echo 2015061000 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061000 + cut -c9-10 + echo 2015061000 + NL_START_HOUR=00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + NL_END_HOUR=01,01 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_00:00:00\',\'2015-06-10_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13169 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_2583.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147042 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_DATE=2015061001 + export P_DATE + [[ 2015061001 -le 2015061001 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061001 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + cut -c1-4 + echo 2015061001 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061001 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061001 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061001 + L_START_HOUR=01 + export L_START_HOUR + cut -c1-4 + echo 2015061002 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061002 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061002 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061002 + L_END_HOUR=02 + export L_END_HOUR + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + NL_START_HOUR=01,01 + export NL_START_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_END_HOUR=02,02 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13259 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_14473.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147055 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061001 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061000 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + cut -c1-4 + echo 2015061000 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061000 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061000 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061000 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061001 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061001 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061001 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061001 + L_END_HOUR=01 + export L_END_HOUR + cut -c1-4 + echo 2015061000 + cut -c1-4 + echo 2015061000 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061000 + cut -c5-6 + echo 2015061000 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061000 + cut -c7-8 + echo 2015061000 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061000 + cut -c9-10 + echo 2015061000 + NL_START_HOUR=00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + NL_END_HOUR=01,01 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_00:00:00\',\'2015-06-10_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\'' + export NL_END_DATE + P_DATE=2015061000 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_END_DATE=2015061001 + export P_END_DATE + [[ 2015061000 -le 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_00:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-09_23:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_00:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15786.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13367 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8602.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147074 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25148.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13395 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29746.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147075 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12891.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13423 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17770.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147076 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26999.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13451 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8443.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147077 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6083.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13478 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19408.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147078 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11381.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13506 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6227.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147079 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_874.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13534 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6523.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147080 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1101.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13561 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7103.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147081 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9786.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13589 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20665.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147082 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6193.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13616 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1306.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147083 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + sleep 45 + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e002 cp: cannot stat ‘wrfda_cr_2/wrfvar_output’: No such file or directory + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + sleep 45 + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e005 cp: cannot stat ‘wrfda_cr_5/wrfvar_output’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + sleep 45 + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e007 cp: cannot stat ‘wrfda_cr_7/wrfvar_output’: No such file or directory + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + sleep 45 + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e010 cp: cannot stat ‘wrfda_cr_10/wrfvar_output’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_DATE=2015061001 + export P_DATE + [[ 2015061001 -le 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_01:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_00:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8602.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14146 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23192.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147095 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14174 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32257.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147096 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17770.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14201 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31281.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147097 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8443.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14229 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17094.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147098 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14256 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20074.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147099 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6227.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14284 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21781.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147100 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14311 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22716.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147101 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7103.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14339 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18282.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147102 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20665.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14367 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28028.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147104 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14394 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12190.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147105 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061001 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=12925 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=14653 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20818.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147106 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=12925 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=14864 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20777.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147107 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=12925 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15077 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13833.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147109 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=12925 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15293 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6567.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147110 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=12925 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15626 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12966.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147111 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=12925 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15838 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9149.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147112 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=12925 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16050 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_4417.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147113 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=12925 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16266 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7257.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147114 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=12925 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16477 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19245.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147115 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=12925 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16688 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20801.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147116 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + LE_DATE=2015061001 + export LE_DATE + [[ 2015061000 -le 2015061001 ]] + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061000 -eq 2015061000 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16760 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_19688.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147117 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_00:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061001 -eq 2015061000 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18504 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_7346.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147126 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_01:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + rm -rf GLOBAL_FINNv15_2014_MOZ4_7112014.txt GLOBAL_FINNv15_2015_MOZ4_11032016.txt GLOBAL_FINNv15_2016_MOZ4_11022016.txt GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=12925 + JOBRND=3875_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=3875_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20215 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_3861.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147142 + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_00:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_00:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_00:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_00:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_01:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_01:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_01:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_01:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + LE_DATE=2015061001 + export LE_DATE + [[ 2015061000 -le 2015061001 ]] + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_00:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_01:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_01:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + echo 'AAA01 ' 2015061000 AAA01 2015061000 + echo 'AAA02 ' 2015061000 AAA02 2015061000 + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 3875_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour true export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147143 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=00 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_00:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_00:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 ./. + mv wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e000 + mv wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_d01_2015-06-10_00:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20785 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.20785 rm -f tmp.20785 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e000 set files = ( wrfinput_d01_2015-06-10_00:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e000 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20872 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.20872 rm -f tmp.20872 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.20872 rm -f tmp.20872 if ( wrfinput_d01_2015-06-10_00:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 echo wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 ln -s wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e000 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e000 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01_2015-06-10_00:00:00 + mv wrfbdy_d01_2015-06-10_00:00:00.e000 wrfbdy_d01_2015-06-10_00:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=00 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20960 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.20960 rm -f tmp.20960 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e001 set files = ( wrfinput_d01_2015-06-10_00:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e001 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21039 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.21039 rm -f tmp.21039 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21039 rm -f tmp.21039 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e001 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e001 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21129 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.21129 rm -f tmp.21129 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e002 set files = ( wrfinput_d01_2015-06-10_00:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e002 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21206 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.21206 rm -f tmp.21206 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21206 rm -f tmp.21206 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e002 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e002 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21291 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.21291 rm -f tmp.21291 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e003 set files = ( wrfinput_d01_2015-06-10_00:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e003 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21368 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.21368 rm -f tmp.21368 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21368 rm -f tmp.21368 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e003 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e003 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21455 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_00:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.21455 rm -f tmp.21455 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e004 set files = ( wrfinput_d01_2015-06-10_00:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e004 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21536 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.21536 rm -f tmp.21536 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21536 rm -f tmp.21536 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e004 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e004 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21621 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_00:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.21621 rm -f tmp.21621 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e005 set files = ( wrfinput_d01_2015-06-10_00:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e005 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21700 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.21700 rm -f tmp.21700 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21700 rm -f tmp.21700 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e005 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e005 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21786 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_00:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.21786 rm -f tmp.21786 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e006 set files = ( wrfinput_d01_2015-06-10_00:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e006 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21869 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.21869 rm -f tmp.21869 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21869 rm -f tmp.21869 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e006 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e006 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22016 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_00:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.22016 rm -f tmp.22016 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e007 set files = ( wrfinput_d01_2015-06-10_00:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e007 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22154 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.22154 rm -f tmp.22154 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.22154 rm -f tmp.22154 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e007 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e007 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22239 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.22239 rm -f tmp.22239 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e008 set files = ( wrfinput_d01_2015-06-10_00:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e008 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22321 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.22321 rm -f tmp.22321 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.22321 rm -f tmp.22321 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e008 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e008 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22406 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.22406 rm -f tmp.22406 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e009 set files = ( wrfinput_d01_2015-06-10_00:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e009 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22484 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.22484 rm -f tmp.22484 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.22484 rm -f tmp.22484 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e009 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e009 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22569 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.22569 rm -f tmp.22569 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e010 set files = ( wrfinput_d01_2015-06-10_00:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e010 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22650 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.22650 rm -f tmp.22650 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.22650 rm -f tmp.22650 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e010 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e010 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_d01_2015-06-10_00:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e001 wrfbdy_d01_2015-06-10_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e002 wrfbdy_d01_2015-06-10_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e003 wrfbdy_d01_2015-06-10_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e004 wrfbdy_d01_2015-06-10_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e005 wrfbdy_d01_2015-06-10_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e006 wrfbdy_d01_2015-06-10_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e007 wrfbdy_d01_2015-06-10_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e008 wrfbdy_d01_2015-06-10_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e009 wrfbdy_d01_2015-06-10_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e010 wrfbdy_d01_2015-06-10_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + rm -rf perturb_chem_emiss_CORR_RT_CONST.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + LE_DATE=2015061001 + export LE_DATE + [[ 2015061000 -le 2015061001 ]] + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + WRFCHEMI=wrfchemi_d01_2015-06-10_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_00:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_00:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=23040 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_28522.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147147 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + WRFCHEMI=wrfchemi_d01_2015-06-10_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_01:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_01:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=23387 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_6164.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147150 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_00:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/airnow_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 00 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=09 + export L_DD + L_HH=24 + export L_HH + D_DATE=2015060924 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=09 + export NL_DAY + NL_HOUR=24 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=09 hour0=24 beg_year=2015 beg_mon=06 beg_day=09 beg_hour=23 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=00 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061000.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061000.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/tolnet_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 00 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + ((L_DD=09+1)) + L_HH=00 + export L_HH + D_DATE=2015061000 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=00 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=00 beg_year=2015 beg_mon=06 beg_day=09 beg_hour=23 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=00 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061000.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + touch NO_DATA_2015061000 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/prepbufr_met_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/prepbufr_met_obs + L_DATE=2015060906 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015060906 +24 + 2> /dev/null + E_DATE=2015061006 + export E_DATE + [[ 2015060906 -le 2015061006 ]] + cut -c1-4 + echo 2015060906 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015060906 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015060906 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015060906 + L_DD=09 + export L_DD + cut -c9-10 + echo 2015060906 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150609.t06z.nr prepqm15060906 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015060906 +6 + 2> /dev/null + L_DATE=2015060912 + export L_DATE + [[ 2015060912 -le 2015061006 ]] + cut -c1-4 + echo 2015060912 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015060912 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015060912 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015060912 + L_DD=09 + export L_DD + cut -c9-10 + echo 2015060912 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150609.t12z.nr prepqm15060912 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015060912 +6 + 2> /dev/null + L_DATE=2015060918 + export L_DATE + [[ 2015060918 -le 2015061006 ]] + cut -c1-4 + echo 2015060918 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015060918 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015060918 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015060918 + L_DD=09 + export L_DD + cut -c9-10 + echo 2015060918 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150609.t18z.nr prepqm15060918 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015060918 +6 + 2> /dev/null + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr prepqm15061000 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +6 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061006 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 9 9 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 09, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061000 obs_seq_prep_2015061000.out mv: cannot stat ‘obs_seq2015061000’: No such file or directory + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/combine_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/prepbufr_met_obs/obs_seq_prep_2015061000.out ]] + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/airnow_o3_obs/obs_seq_airnow_o3_2015061000.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/airnow_o3_obs/obs_seq_airnow_o3_2015061000.out ./obs_seq_AIR_O3_2015061000.out + (( NUM_FILES=0+1 )) + FILE_LIST[1]=obs_seq_AIR_O3_2015061000.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/tolnet_o3_obs/obs_seq_tolnet_o3_2015061000.out ]] + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + [[ 1 -eq 8 ]] + [[ 1 -eq 7 ]] + [[ 1 -eq 6 ]] + [[ 1 -eq 5 ]] + [[ 1 -eq 4 ]] + [[ 1 -eq 3 ]] + [[ 1 -eq 2 ]] + [[ 1 -eq 1 ]] + NL_FILENAME_SEQ=$'\'obs_seq_AIR_O3_2015061000.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151369 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=84600 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=1800 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 1 filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151369, first_obs_seconds = 84600, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 13 19 59 10 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151369, sec=84600 which is Gregorian day: 2015 Jun 09 23:30:00 Excluding observations after: day=151370, sec=1800 which is Gregorian day: 2015 Jun 10 00:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061000.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 956 Number of obs really inserted : 956 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 956 Actual number of obs in the new seq file : 956 Processing sequence file obs_seq.proc Data Metadata: AIRNOW observation QC Metadata: AIRNOW QC index First obs time: day=151370, sec=0 Gregorian day: 2015 Jun 10 00:00:00 Last obs time: day=151370, sec=0 Gregorian day: 2015 Jun 10 00:00:00 Number of obs processed : 956 --------------------------------------------------------- AIRNOW_O3 956 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 13 19 59 10 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061000.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/preprocess_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84600, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151369, first_obs_seconds = 84600, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84600, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/combine_obs/obs_seq_comb_2015061000.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 3875_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 0 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147157 + mv obs_seq.new obs_seq_comb_filtered_2015061000.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + TRANDOM=12925 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + false + [[ ! -e run_e001 ]] + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e001 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e001 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e001 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e001 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e001 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e001 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e001 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25182 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_5383.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147160 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + false + [[ ! -e run_e002 ]] + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e002 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e002 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e002 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e002 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e002 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e002 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e002 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25278 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_26943.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147161 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + false + [[ ! -e run_e003 ]] + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e003 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e003 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e003 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e003 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e003 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e003 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e003 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25374 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_27615.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147162 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + false + [[ ! -e run_e004 ]] + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e004 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e004 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e004 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e004 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e004 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e004 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e004 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25471 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_730.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147163 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + false + [[ ! -e run_e005 ]] + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e005 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e005 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e005 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e005 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e005 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e005 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e005 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25571 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_22254.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147164 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + false + [[ ! -e run_e006 ]] + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e006 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e006 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e006 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e006 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e006 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e006 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e006 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25668 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_27673.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147165 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + false + [[ ! -e run_e007 ]] + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e007 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e007 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e007 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e007 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e007 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e007 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e007 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25764 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_15131.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147166 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + false + [[ ! -e run_e008 ]] + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e008 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e008 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e008 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e008 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e008 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e008 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e008 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25861 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_15403.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147167 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + false + [[ ! -e run_e009 ]] + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e009 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e009 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e009 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e009 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e009 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e009 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e009 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25958 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_6111.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147168 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + false + [[ ! -e run_e010 ]] + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e010 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e010 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e010 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e010 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e010 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e010 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e010 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 01,01, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26054 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_2310.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147169 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/ensemble_mean_input ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + false + false + false + false + false + CYCLE_DATE=2015061001 + export CYCLE_DATE + [[ 2015061001 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061001 + export DATE + echo 2015061001 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061001 + YY=15 + export YY + cut -c5-6 + echo 2015061001 + MM=06 + export MM + cut -c7-8 + echo 2015061001 + DD=10 + export DD + cut -c9-10 + echo 2015061001 + HH=01 + export HH + DATE_SHORT=15061001 + export DATE_SHORT + FILE_DATE=2015-06-10_01:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 -1 + 2> /dev/null + PAST_DATE=2015061000 + export PAST_DATE + cut -c1-4 + echo 2015061000 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061000 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061000 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061000 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061000 + PAST_HH=00 + export PAST_HH + PAST_FILE_DATE=2015-06-10_00:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + NEXT_DATE=2015061002 + export NEXT_DATE + cut -c1-4 + echo 2015061002 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061002 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061002 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061002 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061002 + NEXT_HH=02 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_02:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=01 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 01 + 0 )) + [[ 01 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=01 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 01 + 0 )) + D_DATE=2015061001 + export D_DATE + echo 2015061001 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 3600 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=3600 + export SEC_GREG + echo 2015061002 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 7200 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=7200 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100030 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100030 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100030 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100030 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100030 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100030 + ASIM_MIN_HH=00 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100130 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100130 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100130 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100130 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100130 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100130 + ASIM_MAX_HH=01 + export ASIM_MAX_HH + echo 201506100030 201506100030 + echo 201506100030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 1800 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=1800 + export ASIM_MIN_SEC_GREG + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=5400 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061001 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061001 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + END_DATE=2015061002 + export END_DATE + cut -c1-4 + echo 2015061001 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061001 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061001 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061001 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061001 + START_HOUR=01 + export START_HOUR + START_FILE_DATE=2015-06-10_01:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061002 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061002 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061002 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061002 + END_HOUR=02 + export END_HOUR + END_FILE_DATE=2015-06-10_02:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=01,01 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=02,02 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_00:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 1800 + (( temp[1]=1800+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=1801 + export NL_FIRST_OBS_SECONDS + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=5400 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061001 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.false. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.false. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.false. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.false. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=1 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=1 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=7200 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100030 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100130 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100030 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100030 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100030 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100030 + ASIM_MN_HH=00 + export ASIM_MN_HH + cut -c1-4 + echo 201506100130 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100130 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100130 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100130 + ASIM_MX_HH=01 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + E_DATE=2015061002 + export E_DATE + cut -c1-4 + echo 2015061002 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061002 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061002 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061002 + E_HH=02 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061001 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 2 + 2> /dev/null + P_END_DATE=2015061003 + export P_END_DATE + [[ 2015061001 -le 2015061003 ]] + cut -c1-4 + echo 2015061001 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061001 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061001 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061001 + P_HH=01 + export P_HH + P_FILE_DATE=2015-06-10_01:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_01:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_01:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061003 ]] + cut -c1-4 + echo 2015061002 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_02:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061003 ]] + cut -c1-4 + echo 2015061003 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061003 ]] + P_DATE=2015061001 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_END_DATE=2015061002 + export P_END_DATE + [[ 2015061001 -le 2015061002 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061001 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + cut -c1-4 + echo 2015061001 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061001 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061001 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061001 + L_START_HOUR=01 + export L_START_HOUR + cut -c1-4 + echo 2015061002 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061002 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061002 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061002 + L_END_HOUR=02 + export L_END_HOUR + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + NL_START_HOUR=01,01 + export NL_START_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_END_HOUR=02,02 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27899 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_4958.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147187 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061002 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061002 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + cut -c1-4 + echo 2015061002 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061002 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061002 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061002 + L_START_HOUR=02 + export L_START_HOUR + cut -c1-4 + echo 2015061003 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061003 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061003 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061003 + L_END_HOUR=03 + export L_END_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_START_HOUR=02,02 + export NL_START_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_END_HOUR=03,03 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27983 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_30499.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147188 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061002 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061001 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + cut -c1-4 + echo 2015061001 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061001 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061001 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061001 + L_START_HOUR=01 + export L_START_HOUR + cut -c1-4 + echo 2015061002 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061002 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061002 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061002 + L_END_HOUR=02 + export L_END_HOUR + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + NL_START_HOUR=01,01 + export NL_START_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_END_HOUR=02,02 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_END_DATE + P_DATE=2015061001 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_END_DATE=2015061002 + export P_END_DATE + [[ 2015061001 -le 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_01:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_00:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14129.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28095 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11730.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147189 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29374.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28122 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21984.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147190 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21049.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28150 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20642.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147191 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29394.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28178 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16538.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147192 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25968.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28205 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26758.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147193 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13278.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28233 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21595.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147194 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6978.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28260 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20332.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147195 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28896.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28289 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11848.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147196 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11151.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28318 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10757.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147197 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17456.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28345 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11558.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147198 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + sleep 45 + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e005 cp: cannot stat ‘wrfda_cr_5/wrfvar_output’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + sleep 45 + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e009 cp: cannot stat ‘wrfda_cr_9/wrfvar_output’: No such file or directory + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + sleep 45 + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e010 cp: cannot stat ‘wrfda_cr_10/wrfvar_output’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_02:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11730.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28795 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1191.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147199 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21984.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28847 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28496.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147200 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20642.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28874 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6611.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147201 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16538.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28903 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15590.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147202 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28930 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5114.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147203 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21595.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28958 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17528.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147204 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20332.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28986 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23997.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147205 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11848.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29013 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18189.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147206 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29041 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7108.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147207 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29068 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7136.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147208 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + sleep 45 + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e005 cp: cannot stat ‘wrfda_cr_5/wrfvar_output’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + sleep 45 + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e009 cp: cannot stat ‘wrfda_cr_9/wrfvar_output’: No such file or directory + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + sleep 45 + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e010 cp: cannot stat ‘wrfda_cr_10/wrfvar_output’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061002 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=12925 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29588 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5400.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147209 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=12925 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29799 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5200.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147210 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=12925 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30010 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15840.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147211 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=12925 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30222 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15973.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147212 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=12925 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30438 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1278.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147213 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=12925 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30649 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10678.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147214 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=12925 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30860 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_3550.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147215 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=12925 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31071 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26670.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147216 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=12925 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31286 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_17355.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147217 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=12925 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31501 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28071.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147218 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + LE_DATE=2015061002 + export LE_DATE + [[ 2015061001 -le 2015061002 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061001 -eq 2015061001 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31700 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_9347.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147219 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_01:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061002 -eq 2015061001 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=983 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_11959.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147222 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_02:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02 + rm -rf GLOBAL_FINNv15_2014_MOZ4_7112014.txt GLOBAL_FINNv15_2015_MOZ4_11032016.txt GLOBAL_FINNv15_2016_MOZ4_11022016.txt GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=12925 + JOBRND=3875_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=3875_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2629 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_28188.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147238 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_01:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_01:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_01:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_01:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_02:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_02:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_02:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_02:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + LE_DATE=2015061002 + export LE_DATE + [[ 2015061001 -le 2015061002 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_01:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_01:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_02:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + echo 'AAA01 ' 2015061001 AAA01 2015061001 + echo 'AAA02 ' 2015061000 AAA02 2015061000 + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 3875_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147239 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=01 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_01:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_01:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d01_2015-06-10_01:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 ./. + mv wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e000 + mv wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_d01_2015-06-10_01:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3228 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_01:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.3228 rm -f tmp.3228 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e000 set files = ( wrfinput_d01_2015-06-10_01:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e000 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3316 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.3316 rm -f tmp.3316 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00.e000 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.3316 rm -f tmp.3316 if ( wrfinput_d01_2015-06-10_01:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00.e000 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 echo wrfinput_d01_2015-06-10_01:00:00.e000 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00.e000 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 ln -s wrfinput_d01_2015-06-10_01:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e000 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e000 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_01:00:00.e000 wrfinput_d01_2015-06-10_01:00:00 + mv wrfbdy_d01_2015-06-10_01:00:00.e000 wrfbdy_d01_2015-06-10_01:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=01 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3421 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_01:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.3421 rm -f tmp.3421 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e001 set files = ( wrfinput_d01_2015-06-10_01:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e001 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3635 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.3635 rm -f tmp.3635 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.3635 rm -f tmp.3635 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e001 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e001 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3721 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_01:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.3721 rm -f tmp.3721 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e002 set files = ( wrfinput_d01_2015-06-10_01:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e002 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3799 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.3799 rm -f tmp.3799 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.3799 rm -f tmp.3799 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e002 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e002 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3890 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_01:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.3890 rm -f tmp.3890 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e003 set files = ( wrfinput_d01_2015-06-10_01:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e003 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3972 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.3972 rm -f tmp.3972 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.3972 rm -f tmp.3972 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e003 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e003 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4067 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_01:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.4067 rm -f tmp.4067 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e004 set files = ( wrfinput_d01_2015-06-10_01:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e004 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4146 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.4146 rm -f tmp.4146 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4146 rm -f tmp.4146 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e004 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e004 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4234 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_01:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.4234 rm -f tmp.4234 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e005 set files = ( wrfinput_d01_2015-06-10_01:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e005 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4315 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.4315 rm -f tmp.4315 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4315 rm -f tmp.4315 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e005 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e005 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4401 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_01:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.4401 rm -f tmp.4401 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e006 set files = ( wrfinput_d01_2015-06-10_01:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e006 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4478 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.4478 rm -f tmp.4478 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4478 rm -f tmp.4478 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e006 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e006 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4565 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_01:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.4565 rm -f tmp.4565 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e007 set files = ( wrfinput_d01_2015-06-10_01:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e007 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4646 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.4646 rm -f tmp.4646 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4646 rm -f tmp.4646 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e007 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e007 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4733 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_01:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.4733 rm -f tmp.4733 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e008 set files = ( wrfinput_d01_2015-06-10_01:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e008 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4810 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.4810 rm -f tmp.4810 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4810 rm -f tmp.4810 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e008 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e008 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4895 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_01:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.4895 rm -f tmp.4895 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e009 set files = ( wrfinput_d01_2015-06-10_01:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e009 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4979 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.4979 rm -f tmp.4979 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4979 rm -f tmp.4979 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e009 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e009 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5186 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5186 rm -f tmp.5186 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e010 set files = ( wrfinput_d01_2015-06-10_01:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e010 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5263 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5263 rm -f tmp.5263 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5263 rm -f tmp.5263 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e010 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e010 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_d01_2015-06-10_01:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e001 wrfbdy_d01_2015-06-10_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e002 wrfbdy_d01_2015-06-10_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e003 wrfbdy_d01_2015-06-10_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e004 wrfbdy_d01_2015-06-10_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e005 wrfbdy_d01_2015-06-10_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e006 wrfbdy_d01_2015-06-10_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e007 wrfbdy_d01_2015-06-10_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e008 wrfbdy_d01_2015-06-10_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e009 wrfbdy_d01_2015-06-10_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e010 wrfbdy_d01_2015-06-10_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + rm -rf perturb_chem_emiss_CORR_RT_CONST.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + LE_DATE=2015061002 + export LE_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061001 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_01:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_01:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_01:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5651 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_256.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147240 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061001 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_01:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_02:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_02:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5863 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_2473.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147241 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_01:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/airnow_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 01 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=01 + export L_HH + D_DATE=2015061001 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=01 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=01 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=00 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=01 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061001.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061001.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/tolnet_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 01 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=01 + export L_HH + D_DATE=2015061001 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=01 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=01 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=00 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=01 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061001.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061001.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/prepbufr_met_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061001 obs_seq_prep_2015061001.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/combine_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/prepbufr_met_obs/obs_seq_prep_2015061001.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/prepbufr_met_obs/obs_seq_prep_2015061001.out ./obs_seq_MET_2015061001.out + FILE_LIST[1]=obs_seq_MET_2015061001.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/airnow_o3_obs/obs_seq_airnow_o3_2015061001.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/airnow_o3_obs/obs_seq_airnow_o3_2015061001.out ./obs_seq_AIR_O3_2015061001.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061001.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/tolnet_o3_obs/obs_seq_tolnet_o3_2015061001.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/tolnet_o3_obs/obs_seq_tolnet_o3_2015061001.out ./obs_seq_TOL_O3_2015061001.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061001.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061001.out\',\'obs_seq_AIR_O3_2015061001.out\',\'obs_seq_TOL_O3_2015061001.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=1800 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=5400 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 13 21 4 5 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=1800 which is Gregorian day: 2015 Jun 10 00:30:00 Excluding observations after: day=151370, sec=5400 which is Gregorian day: 2015 Jun 10 01:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_MET_2015061001.out are after last_obs time obs_sequence_tool No obs used from input sequence file obs_seq_MET_2015061001.out obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061001.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061001.out obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061001.out -------------- Obs seq file # : 2 Number of obs in previous seq : 0 Number of obs to be inserted : 959 Number of obs really inserted : 959 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 959 Actual number of obs in the new seq file : 959 Processing sequence file obs_seq.proc Data Metadata: AIRNOW observation QC Metadata: AIRNOW QC index First obs time: day=151370, sec=3600 Gregorian day: 2015 Jun 10 01:00:00 Last obs time: day=151370, sec=3600 Gregorian day: 2015 Jun 10 01:00:00 Number of obs processed : 959 --------------------------------------------------------- AIRNOW_O3 959 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 13 21 4 5 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061001.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/preprocess_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/combine_obs/obs_seq_comb_2015061001.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 3875_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 3600 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147243 + mv obs_seq.new obs_seq_comb_filtered_2015061001.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061001 -eq 2015061001 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/preprocess_obs/obs_seq_comb_filtered_2015061001.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/preprocess_obs/obs_seq_comb_filtered_2015061001.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_01:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_01:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_01:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_01:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_01:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_01:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_01:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_01:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_01:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_01:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e001 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e002 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e003 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e004 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e005 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e006 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e007 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e008 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e009 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e010 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e001 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9777 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_6106.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147244 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e002 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9781 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_24214.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147245 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e003 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9785 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_10128.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147246 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e004 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9789 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_14325.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147247 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e005 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9793 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_21706.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147248 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e006 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9797 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_13463.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147249 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e007 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9801 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_3154.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147250 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e008 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9805 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_13609.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147251 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e009 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9809 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_162.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147252 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_wrf_e010 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9813 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_30959.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147253 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061001.out','obs_seq_AIR_O3_2015061001.out','obs_seq_TOL_O3_2015061001.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1800, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + true + [[ 2015061001 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.false. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.false. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.false. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.false. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061001 -ne 2015061001 ]] + echo 201506100030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 1800 + (( temp[1]=1800+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=1801 + export NL_FIRST_OBS_SECONDS + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=5400 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=12925 + JOBRND=3875_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=3875_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=10218 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 3875_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_7362.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147254 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10936 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_31131.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147255 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11147 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_8109.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147256 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11358 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_2910.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147257 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11568 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_26411.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147258 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11783 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_1417.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147259 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11994 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_18035.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147260 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12303 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_5017.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147261 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12538 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_18579.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147262 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12749 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_22493.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147263 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_01:00:00 wrfinput_d01 + LL_DATE=2015061001 + export LL_DATE + LL_END_DATE=2015061001 + export LL_END_DATE + echo 2015061001 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061001 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061001 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061001 + cut -c9-10 + LL_HH=01 + export LL_HH + LL_FILE_DATE=2015-06-10_01:00:00 + export LL_FILE_DATE + [[ 2015061001 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12968 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_29610.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147264 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-10_01:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-10_01:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-10_01:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-10_01:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-10_01:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-10_01:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-10_01:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-10_01:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-10_01:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-10_01:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e001 wrfbdy_d01_2015-06-10_01:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e002 wrfbdy_d01_2015-06-10_01:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e003 wrfbdy_d01_2015-06-10_01:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e004 wrfbdy_d01_2015-06-10_01:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e005 wrfbdy_d01_2015-06-10_01:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e006 wrfbdy_d01_2015-06-10_01:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e007 wrfbdy_d01_2015-06-10_01:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e008 wrfbdy_d01_2015-06-10_01:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e009 wrfbdy_d01_2015-06-10_01:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e010 wrfbdy_d01_2015-06-10_01:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/ensemble_mean_input ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/real/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + TRANDOM=12925 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e001 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e001 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e001 wrfchemi_d01_2015-06-10_01:00:00 + [[ 2015061001 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e001 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e001 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e001 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15305 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_1467.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147272 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e002 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e002 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e002 wrfchemi_d01_2015-06-10_01:00:00 + [[ 2015061001 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e002 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e002 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e002 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e002 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e002 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15537 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_28731.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147273 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e003 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e003 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e003 wrfchemi_d01_2015-06-10_01:00:00 + [[ 2015061001 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e003 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e003 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e003 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e003 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e003 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15640 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_26164.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147274 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e004 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e004 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e004 wrfchemi_d01_2015-06-10_01:00:00 + [[ 2015061001 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e004 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e004 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e004 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e004 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e004 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15746 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_32392.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147275 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e005 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e005 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e005 wrfchemi_d01_2015-06-10_01:00:00 + [[ 2015061001 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e005 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e005 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e005 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e005 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e005 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15848 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_23678.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147276 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e006 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e006 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e006 wrfchemi_d01_2015-06-10_01:00:00 + [[ 2015061001 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e006 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e006 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e006 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e006 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e006 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15955 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_28117.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147277 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e007 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e007 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e007 wrfchemi_d01_2015-06-10_01:00:00 + [[ 2015061001 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e007 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e007 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e007 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e007 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e007 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16057 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_15561.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147278 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e008 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e008 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e008 wrfchemi_d01_2015-06-10_01:00:00 + [[ 2015061001 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e008 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e008 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e008 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e008 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e008 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16160 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_945.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147279 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e009 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e009 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e009 wrfchemi_d01_2015-06-10_01:00:00 + [[ 2015061001 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e009 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e009 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e009 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e009 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e009 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16263 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_26680.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147280 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e010 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e010 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e010 wrfchemi_d01_2015-06-10_01:00:00 + [[ 2015061001 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e010 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e010 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e010 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e010 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e010 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 01,01, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 02,02, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16366 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_18144.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147281 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/ensemble_mean_output ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/ensemble_mean_output + [[ 2015061001 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + export OUTPUT_DIR + rm -rf wrfout_d01_0001 wrfout_d01_0002 wrfout_d01_0003 wrfout_d01_0004 wrfout_d01_0005 wrfout_d01_0006 wrfout_d01_0007 wrfout_d01_0008 wrfout_d01_0009 wrfout_d01_0010 wrfout_d01_2015061001_mean wrfout_d01_2015061002_mean + P_DATE=2015061001 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_END_DATE=2015061002 + export P_END_DATE + [[ 2015061001 -le 2015061002 ]] + cut -c1-4 + echo 2015061001 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061001 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061001 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061001 + P_HH=01 + export P_HH + P_FILE_DATE=2015-06-10_01:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061001_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061002_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061002 ]] + CYCLE_DATE=2015061002 + export CYCLE_DATE + [[ 2015061002 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061002 + export DATE + cut -c1-4 + echo 2015061002 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061002 + YY=15 + export YY + cut -c5-6 + echo 2015061002 + MM=06 + export MM + cut -c7-8 + echo 2015061002 + DD=10 + export DD + cut -c9-10 + echo 2015061002 + HH=02 + export HH + DATE_SHORT=15061002 + export DATE_SHORT + FILE_DATE=2015-06-10_02:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -1 + 2> /dev/null + PAST_DATE=2015061001 + export PAST_DATE + cut -c1-4 + echo 2015061001 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061001 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061001 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061001 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061001 + PAST_HH=01 + export PAST_HH + PAST_FILE_DATE=2015-06-10_01:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + NEXT_DATE=2015061003 + export NEXT_DATE + cut -c1-4 + echo 2015061003 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061003 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061003 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061003 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061003 + NEXT_HH=03 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_03:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=02 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 02 + 0 )) + [[ 02 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=02 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 02 + 0 )) + D_DATE=2015061002 + export D_DATE + echo 2015061002 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 7200 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=7200 + export SEC_GREG + echo 2015061003 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 10800 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=10800 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100130 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100130 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100130 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100130 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100130 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100130 + ASIM_MIN_HH=01 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100230 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100230 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100230 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100230 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100230 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100230 + ASIM_MAX_HH=02 + export ASIM_MAX_HH + echo 201506100130 201506100130 + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=5400 + export ASIM_MIN_SEC_GREG + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=9000 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061002 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061002 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + END_DATE=2015061003 + export END_DATE + cut -c1-4 + echo 2015061002 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061002 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061002 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061002 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061002 + START_HOUR=02 + export START_HOUR + START_FILE_DATE=2015-06-10_02:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061003 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061003 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061003 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061003 + END_HOUR=03 + export END_HOUR + END_FILE_DATE=2015-06-10_03:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=02,02 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=03,03 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + (( temp[1]=5400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=5401 + export NL_FIRST_OBS_SECONDS + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=9000 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061002 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=2 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=2 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=10800 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100130 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100230 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100130 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100130 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100130 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100130 + ASIM_MN_HH=01 + export ASIM_MN_HH + cut -c1-4 + echo 201506100230 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100230 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100230 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100230 + ASIM_MX_HH=02 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + E_DATE=2015061003 + export E_DATE + cut -c1-4 + echo 2015061003 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061003 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061003 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061003 + E_HH=03 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061002 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 2 + 2> /dev/null + P_END_DATE=2015061004 + export P_END_DATE + [[ 2015061002 -le 2015061004 ]] + cut -c1-4 + echo 2015061002 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_02:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061004 ]] + cut -c1-4 + echo 2015061003 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061004 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061004 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061004 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-10_04:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_04:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061004 ]] + P_DATE=2015061002 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_END_DATE=2015061003 + export P_END_DATE + [[ 2015061002 -le 2015061003 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061002 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + cut -c1-4 + echo 2015061002 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061002 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061002 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061002 + L_START_HOUR=02 + export L_START_HOUR + cut -c1-4 + echo 2015061003 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061003 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061003 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061003 + L_END_HOUR=03 + export L_END_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_START_HOUR=02,02 + export NL_START_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_END_HOUR=03,03 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19219 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_30657.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147317 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061003 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061003 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + cut -c1-4 + echo 2015061003 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061003 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061003 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061003 + L_START_HOUR=03 + export L_START_HOUR + cut -c1-4 + echo 2015061004 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061004 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061004 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061004 + L_END_HOUR=04 + export L_END_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_START_HOUR=03,03 + export NL_START_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_END_HOUR=04,04 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19307 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_14402.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147319 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061003 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061002 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + cut -c1-4 + echo 2015061002 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061002 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061002 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061002 + L_START_HOUR=02 + export L_START_HOUR + cut -c1-4 + echo 2015061003 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061003 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061003 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061003 + L_END_HOUR=03 + export L_END_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_START_HOUR=02,02 + export NL_START_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_END_HOUR=03,03 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_END_DATE + P_DATE=2015061002 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_END_DATE=2015061003 + export P_END_DATE + [[ 2015061002 -le 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_02:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7507.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19414 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17470.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147320 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19441 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8596.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147321 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19469 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19941.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147322 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19496 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22451.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147323 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19524 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15901.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147324 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19551 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2123.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147325 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15528.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19579 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9488.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147326 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19606 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17148.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147327 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28751.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19638 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1874.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147328 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18530.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19665 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25512.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147329 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_03:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17470.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19758 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9487.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147330 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8596.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19785 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21157.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147331 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19941.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19813 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9999.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147332 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22451.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19842 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11897.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147333 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15901.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19869 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10348.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147334 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2123.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19984 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19733.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147335 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9488.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20055 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5242.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147336 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17148.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20082 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11659.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147337 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1874.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20110 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23865.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147338 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25512.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20137 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21429.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147339 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061003 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=12925 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20397 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16417.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147340 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=12925 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20608 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12828.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147341 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=12925 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20819 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31693.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147342 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=12925 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21035 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18616.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147344 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=12925 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21247 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30976.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147345 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=12925 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21460 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21274.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147346 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=12925 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21671 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25949.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147347 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=12925 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21886 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6723.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147348 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=12925 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22099 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13062.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147349 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=12925 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22311 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15171.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147350 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + LE_DATE=2015061003 + export LE_DATE + [[ 2015061002 -le 2015061003 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061002 -eq 2015061002 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22383 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_32414.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147351 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_02:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061003 -eq 2015061002 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24147 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_14149.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147485 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_03:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + rm -rf GLOBAL_FINNv15_2014_MOZ4_7112014.txt GLOBAL_FINNv15_2015_MOZ4_11032016.txt GLOBAL_FINNv15_2016_MOZ4_11022016.txt GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=12925 + JOBRND=3875_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=3875_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25857 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_27131.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147499 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_02:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_02:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_02:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_02:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_03:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_03:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_03:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_03:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + LE_DATE=2015061003 + export LE_DATE + [[ 2015061002 -le 2015061003 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_02:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_03:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + echo 'AAA01 ' 2015061002 AAA01 2015061002 + echo 'AAA02 ' 2015061000 AAA02 2015061000 + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 3875_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147501 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_02:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_02:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 ./. + mv wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e000 + mv wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_d01_2015-06-10_02:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.26420 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_02:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.26420 rm -f tmp.26420 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e000 set files = ( wrfinput_d01_2015-06-10_02:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e000 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.26506 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.26506 rm -f tmp.26506 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.26506 rm -f tmp.26506 if ( wrfinput_d01_2015-06-10_02:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e000 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e000 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01_2015-06-10_02:00:00 + mv wrfbdy_d01_2015-06-10_02:00:00.e000 wrfbdy_d01_2015-06-10_02:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.26596 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_02:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.26596 rm -f tmp.26596 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e001 set files = ( wrfinput_d01_2015-06-10_02:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e001 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.26674 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.26674 rm -f tmp.26674 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.26674 rm -f tmp.26674 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e001 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e001 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.26759 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_02:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.26759 rm -f tmp.26759 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e002 set files = ( wrfinput_d01_2015-06-10_02:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e002 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.26841 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.26841 rm -f tmp.26841 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.26841 rm -f tmp.26841 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e002 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e002 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27034 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_02:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.27034 rm -f tmp.27034 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e003 set files = ( wrfinput_d01_2015-06-10_02:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e003 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27127 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.27127 rm -f tmp.27127 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.27127 rm -f tmp.27127 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e003 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e003 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27213 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_02:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.27213 rm -f tmp.27213 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e004 set files = ( wrfinput_d01_2015-06-10_02:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e004 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27294 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.27294 rm -f tmp.27294 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.27294 rm -f tmp.27294 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e004 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e004 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27379 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_02:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.27379 rm -f tmp.27379 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e005 set files = ( wrfinput_d01_2015-06-10_02:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e005 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27458 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.27458 rm -f tmp.27458 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.27458 rm -f tmp.27458 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e005 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e005 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27544 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_02:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.27544 rm -f tmp.27544 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e006 set files = ( wrfinput_d01_2015-06-10_02:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e006 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27628 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 grep --color=auto MOZBC_INP= if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.27628 rm -f tmp.27628 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.27628 rm -f tmp.27628 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e006 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e006 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27714 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_02:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.27714 rm -f tmp.27714 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e007 set files = ( wrfinput_d01_2015-06-10_02:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e007 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27791 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.27791 rm -f tmp.27791 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.27791 rm -f tmp.27791 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e007 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e007 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27880 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_02:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.27880 rm -f tmp.27880 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e008 set files = ( wrfinput_d01_2015-06-10_02:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e008 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27961 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.27961 rm -f tmp.27961 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.27961 rm -f tmp.27961 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e008 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e008 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28047 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_02:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.28047 rm -f tmp.28047 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e009 set files = ( wrfinput_d01_2015-06-10_02:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e009 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28124 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.28124 rm -f tmp.28124 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28124 rm -f tmp.28124 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e009 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e009 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28211 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28211 rm -f tmp.28211 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e010 set files = ( wrfinput_d01_2015-06-10_02:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e010 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28292 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28292 rm -f tmp.28292 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28292 rm -f tmp.28292 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e010 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e010 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_d01_2015-06-10_02:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e001 wrfbdy_d01_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e002 wrfbdy_d01_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e003 wrfbdy_d01_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e004 wrfbdy_d01_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e005 wrfbdy_d01_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e006 wrfbdy_d01_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e007 wrfbdy_d01_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e008 wrfbdy_d01_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e009 wrfbdy_d01_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e010 wrfbdy_d01_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + rm -rf perturb_chem_emiss_CORR_RT_CONST.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + LE_DATE=2015061003 + export LE_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061002 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_02:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_02:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28798 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_9872.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147503 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061002 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29013 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_2979.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147504 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/airnow_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 02 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=02 + export L_HH + D_DATE=2015061002 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=02 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=02 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=01 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=02 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061002.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061002.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/tolnet_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 02 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=02 + export L_HH + D_DATE=2015061002 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=02 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=02 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=01 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=02 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061002.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061002.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/prepbufr_met_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + echo 2015061006 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061002 obs_seq_prep_2015061002.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/combine_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/prepbufr_met_obs/obs_seq_prep_2015061002.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/prepbufr_met_obs/obs_seq_prep_2015061002.out ./obs_seq_MET_2015061002.out + FILE_LIST[1]=obs_seq_MET_2015061002.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/airnow_o3_obs/obs_seq_airnow_o3_2015061002.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/airnow_o3_obs/obs_seq_airnow_o3_2015061002.out ./obs_seq_AIR_O3_2015061002.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061002.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/tolnet_o3_obs/obs_seq_tolnet_o3_2015061002.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/tolnet_o3_obs/obs_seq_tolnet_o3_2015061002.out ./obs_seq_TOL_O3_2015061002.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061002.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061002.out\',\'obs_seq_AIR_O3_2015061002.out\',\'obs_seq_TOL_O3_2015061002.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=5400 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=9000 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 13 22 35 43 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=5400 which is Gregorian day: 2015 Jun 10 01:30:00 Excluding observations after: day=151370, sec=9000 which is Gregorian day: 2015 Jun 10 02:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_MET_2015061002.out are after last_obs time obs_sequence_tool No obs used from input sequence file obs_seq_MET_2015061002.out obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061002.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061002.out obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061002.out -------------- Obs seq file # : 2 Number of obs in previous seq : 0 Number of obs to be inserted : 957 Number of obs really inserted : 957 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 957 Actual number of obs in the new seq file : 957 Processing sequence file obs_seq.proc Data Metadata: AIRNOW observation QC Metadata: AIRNOW QC index First obs time: day=151370, sec=7200 Gregorian day: 2015 Jun 10 02:00:00 Last obs time: day=151370, sec=7200 Gregorian day: 2015 Jun 10 02:00:00 Number of obs processed : 957 --------------------------------------------------------- AIRNOW_O3 957 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 13 22 35 43 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061002.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/preprocess_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/combine_obs/obs_seq_comb_2015061002.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 3875_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 7200 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147514 + mv obs_seq.new obs_seq_comb_filtered_2015061002.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061002 -eq 2015061001 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/preprocess_obs/obs_seq_comb_filtered_2015061002.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/preprocess_obs/obs_seq_comb_filtered_2015061002.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_02:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_02:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_02:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_02:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_02:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_02:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_02:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_02:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_02:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_02:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e001 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e002 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e003 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e004 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e005 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e006 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e007 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e008 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e009 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e010 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e001 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=467 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_27424.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147519 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e002 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=472 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_9721.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147520 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e003 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=476 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_24600.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147521 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e004 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=480 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_14504.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147522 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e005 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=484 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_4898.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147523 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e006 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=488 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_24944.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147524 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e007 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=492 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_9122.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147525 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e008 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=496 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_19024.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147526 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e009 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=500 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_7453.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147527 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_wrf_e010 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=504 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_3046.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147528 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + true + [[ 2015061002 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061002 -ne 2015061001 ]] + [[ 2 != 0 ]] + INF_OUT_FILE_NAME_PRIOR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/prior_inflate_ic_new + export INF_OUT_FILE_NAME_PRIOR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/dart_filter/prior_inflate_ic_new prior_inflate_ic_old + [[ 0 != 0 ]] + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + (( temp[1]=5400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=5401 + export NL_FIRST_OBS_SECONDS + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=9000 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=12925 + JOBRND=3875_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=3875_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1196 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 3875_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_27182.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147529 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1897 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_13005.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147533 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2110 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_31804.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147534 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2330 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_13032.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147535 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2559 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_15800.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147536 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2820 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_16364.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147537 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3031 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_32408.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147538 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3261 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_4513.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147539 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3497 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_14753.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147540 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3716 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_22335.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147541 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061001/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_02:00:00 wrfinput_d01 + LL_DATE=2015061002 + export LL_DATE + LL_END_DATE=2015061002 + export LL_END_DATE + echo 2015061002 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061002 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061002 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061002 + cut -c9-10 + LL_HH=02 + export LL_HH + LL_FILE_DATE=2015-06-10_02:00:00 + export LL_FILE_DATE + [[ 2015061002 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4033 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_13496.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147542 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-10_02:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-10_02:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-10_02:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-10_02:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-10_02:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-10_02:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-10_02:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-10_02:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-10_02:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-10_02:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e001 wrfbdy_d01_2015-06-10_02:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e002 wrfbdy_d01_2015-06-10_02:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e003 wrfbdy_d01_2015-06-10_02:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e004 wrfbdy_d01_2015-06-10_02:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e005 wrfbdy_d01_2015-06-10_02:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e006 wrfbdy_d01_2015-06-10_02:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e007 wrfbdy_d01_2015-06-10_02:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e008 wrfbdy_d01_2015-06-10_02:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e009 wrfbdy_d01_2015-06-10_02:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e010 wrfbdy_d01_2015-06-10_02:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/ensemble_mean_input ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + TRANDOM=12925 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e001 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e001 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e001 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e001 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e001 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6409 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_2255.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147555 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e002 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e002 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e002 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e002 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e002 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e002 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e002 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e002 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6512 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_3472.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147557 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e003 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e003 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e003 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e003 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e003 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e003 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e003 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e003 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6618 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_32193.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147561 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e004 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e004 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e004 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e004 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e004 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e004 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e004 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e004 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6720 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_5648.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147569 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e005 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e005 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e005 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e005 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e005 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e005 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e005 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e005 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6828 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_16768.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147577 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e006 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e006 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e006 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e006 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e006 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e006 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e006 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e006 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6995 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_26400.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147585 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e007 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e007 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e007 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e007 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e007 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e007 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e007 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e007 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7157 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_18746.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147592 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e008 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e008 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e008 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e008 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e008 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e008 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e008 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e008 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7261 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31378.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147593 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e009 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e009 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e009 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e009 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e009 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e009 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e009 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e009 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7363 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_24164.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147594 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e010 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e010 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e010 wrfchemi_d01_2015-06-10_02:00:00 + [[ 2015061002 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e010 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e010 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e010 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e010 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e010 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 02,02, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7470 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_25880.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147595 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/ensemble_mean_output ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/ensemble_mean_output + [[ 2015061002 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + export OUTPUT_DIR + rm -rf wrfout_d01_0001 wrfout_d01_0002 wrfout_d01_0003 wrfout_d01_0004 wrfout_d01_0005 wrfout_d01_0006 wrfout_d01_0007 wrfout_d01_0008 wrfout_d01_0009 wrfout_d01_0010 wrfout_d01_2015061002_mean wrfout_d01_2015061003_mean + P_DATE=2015061002 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_END_DATE=2015061003 + export P_END_DATE + [[ 2015061002 -le 2015061003 ]] + cut -c1-4 + echo 2015061002 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061002_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061003_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061003 ]] + CYCLE_DATE=2015061003 + export CYCLE_DATE + [[ 2015061003 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061003 + export DATE + cut -c1-4 + echo 2015061003 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061003 + YY=15 + export YY + cut -c5-6 + echo 2015061003 + MM=06 + export MM + cut -c7-8 + echo 2015061003 + DD=10 + export DD + cut -c9-10 + echo 2015061003 + HH=03 + export HH + DATE_SHORT=15061003 + export DATE_SHORT + FILE_DATE=2015-06-10_03:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -1 + 2> /dev/null + PAST_DATE=2015061002 + export PAST_DATE + cut -c1-4 + echo 2015061002 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061002 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061002 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061002 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061002 + PAST_HH=02 + export PAST_HH + PAST_FILE_DATE=2015-06-10_02:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + NEXT_DATE=2015061004 + export NEXT_DATE + cut -c1-4 + echo 2015061004 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061004 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061004 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061004 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061004 + NEXT_HH=04 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_04:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=03 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 03 + 0 )) + [[ 03 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=03 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 03 + 0 )) + D_DATE=2015061003 + export D_DATE + echo 2015061003 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 10800 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=10800 + export SEC_GREG + echo 2015061004 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 14400 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=14400 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100230 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100230 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100230 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100230 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100230 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100230 + ASIM_MIN_HH=02 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100330 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100330 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100330 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100330 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100330 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100330 + ASIM_MAX_HH=03 + export ASIM_MAX_HH + echo 201506100230 201506100230 + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=9000 + export ASIM_MIN_SEC_GREG + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=12600 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061003 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061003 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + END_DATE=2015061004 + export END_DATE + cut -c1-4 + echo 2015061003 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061003 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061003 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061003 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061003 + START_HOUR=03 + export START_HOUR + START_FILE_DATE=2015-06-10_03:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061004 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061004 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061004 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061004 + END_HOUR=04 + export END_HOUR + END_FILE_DATE=2015-06-10_04:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=03,03 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=04,04 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + (( temp[1]=9000+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=9001 + export NL_FIRST_OBS_SECONDS + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=12600 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061003 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=3 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=3 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=14400 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100230 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100330 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100230 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100230 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100230 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100230 + ASIM_MN_HH=02 + export ASIM_MN_HH + cut -c1-4 + echo 201506100330 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100330 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100330 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100330 + ASIM_MX_HH=03 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + E_DATE=2015061004 + export E_DATE + cut -c1-4 + echo 2015061004 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061004 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061004 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061004 + E_HH=04 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061003 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 2 + 2> /dev/null + P_END_DATE=2015061005 + export P_END_DATE + [[ 2015061003 -le 2015061005 ]] + cut -c1-4 + echo 2015061003 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061005 ]] + cut -c1-4 + echo 2015061004 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061004 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061004 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061004 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-10_04:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_04:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061005 ]] + cut -c1-4 + echo 2015061005 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061005 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061005 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061005 + P_HH=05 + export P_HH + P_FILE_DATE=2015-06-10_05:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_05:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061005 ]] + P_DATE=2015061003 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_END_DATE=2015061004 + export P_END_DATE + [[ 2015061003 -le 2015061004 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061003 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + cut -c1-4 + echo 2015061003 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061003 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061003 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061003 + L_START_HOUR=03 + export L_START_HOUR + cut -c1-4 + echo 2015061004 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061004 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061004 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061004 + L_END_HOUR=04 + export L_END_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_START_HOUR=03,03 + export NL_START_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_END_HOUR=04,04 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9223 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_1089.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147646 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061004 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061004 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + cut -c1-4 + echo 2015061004 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061004 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061004 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061004 + L_START_HOUR=04 + export L_START_HOUR + cut -c1-4 + echo 2015061005 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061005 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061005 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061005 + L_END_HOUR=05 + export L_END_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_START_HOUR=04,04 + export NL_START_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_END_HOUR=05,05 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9306 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_30257.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147647 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061004 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061003 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + cut -c1-4 + echo 2015061003 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061003 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061003 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061003 + L_START_HOUR=03 + export L_START_HOUR + cut -c1-4 + echo 2015061004 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061004 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061004 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061004 + L_END_HOUR=04 + export L_END_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_START_HOUR=03,03 + export NL_START_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_END_HOUR=04,04 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_END_DATE + P_DATE=2015061003 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_END_DATE=2015061004 + export P_END_DATE + [[ 2015061003 -le 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_03:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11730.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9416 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2884.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147648 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10100.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9444 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_331.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147649 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5647.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9472 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13142.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147650 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16027.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9499 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19084.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147651 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13638.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9527 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4983.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147652 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18279.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9555 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5005.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147653 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16642.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9582 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2930.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147654 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15288.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9610 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32020.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147655 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31162.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9638 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26615.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147656 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6922.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9665 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16818.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147657 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_04:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2884.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9880 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1902.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147658 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_331.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9907 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21705.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147659 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13142.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9935 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21838.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147660 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19084.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9966 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10445.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147661 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4983.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9994 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26854.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147662 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5005.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=10022 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13138.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147663 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2930.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=10049 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2600.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147664 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32020.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=10077 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1157.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147665 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26615.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=10105 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21610.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147666 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16818.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=10132 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30406.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147667 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061004 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=12925 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10391 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2087.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147668 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=12925 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10602 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2126.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147669 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=12925 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10813 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16493.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147670 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=12925 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11025 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9919.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147671 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=12925 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11242 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32387.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147672 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=12925 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11453 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_3486.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147673 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=12925 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11665 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2240.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147674 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=12925 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11877 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32376.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147675 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=12925 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12092 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10498.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147676 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=12925 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12304 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_23378.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147677 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + LE_DATE=2015061004 + export LE_DATE + [[ 2015061003 -le 2015061004 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061003 -eq 2015061003 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12499 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_2784.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147678 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_03:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061004 -eq 2015061003 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=14109 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_14881.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147691 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_04:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + rm -rf GLOBAL_FINNv15_2014_MOZ4_7112014.txt GLOBAL_FINNv15_2015_MOZ4_11032016.txt GLOBAL_FINNv15_2016_MOZ4_11022016.txt GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=12925 + JOBRND=3875_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=3875_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15815 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_11961.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147692 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_03:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_03:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_03:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_03:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_04:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_04:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_04:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_04:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + LE_DATE=2015061004 + export LE_DATE + [[ 2015061003 -le 2015061004 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_03:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_04:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + echo 'AAA01 ' 2015061003 AAA01 2015061003 + echo 'AAA02 ' 2015061000 AAA02 2015061000 + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 3875_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147755 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_03:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_03:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 ./. + mv wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e000 + mv wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_d01_2015-06-10_03:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16376 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_03:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.16376 rm -f tmp.16376 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e000 set files = ( wrfinput_d01_2015-06-10_03:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e000 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16463 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.16463 rm -f tmp.16463 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.16463 rm -f tmp.16463 if ( wrfinput_d01_2015-06-10_03:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e000 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e000 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01_2015-06-10_03:00:00 + mv wrfbdy_d01_2015-06-10_03:00:00.e000 wrfbdy_d01_2015-06-10_03:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16552 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_03:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.16552 rm -f tmp.16552 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e001 set files = ( wrfinput_d01_2015-06-10_03:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e001 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16628 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.16628 rm -f tmp.16628 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.16628 rm -f tmp.16628 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e001 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e001 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16714 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_03:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.16714 rm -f tmp.16714 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e002 set files = ( wrfinput_d01_2015-06-10_03:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e002 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16792 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.16792 rm -f tmp.16792 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.16792 rm -f tmp.16792 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e002 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e002 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16884 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_03:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.16884 rm -f tmp.16884 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e003 set files = ( wrfinput_d01_2015-06-10_03:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e003 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.17089 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.17089 rm -f tmp.17089 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.17089 rm -f tmp.17089 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e003 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e003 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.17174 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_03:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.17174 rm -f tmp.17174 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e004 set files = ( wrfinput_d01_2015-06-10_03:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e004 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.17253 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.17253 rm -f tmp.17253 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.17253 rm -f tmp.17253 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e004 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e004 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.17343 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_03:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.17343 rm -f tmp.17343 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e005 set files = ( wrfinput_d01_2015-06-10_03:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e005 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.17421 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.17421 rm -f tmp.17421 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.17421 rm -f tmp.17421 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e005 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e005 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.17507 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_03:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.17507 rm -f tmp.17507 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e006 set files = ( wrfinput_d01_2015-06-10_03:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e006 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.17584 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.17584 rm -f tmp.17584 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.17584 rm -f tmp.17584 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e006 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e006 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.17670 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_03:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.17670 rm -f tmp.17670 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e007 set files = ( wrfinput_d01_2015-06-10_03:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e007 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.17753 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.17753 rm -f tmp.17753 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.17753 rm -f tmp.17753 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e007 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e007 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.17839 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_03:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.17839 rm -f tmp.17839 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e008 set files = ( wrfinput_d01_2015-06-10_03:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e008 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.17916 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.17916 rm -f tmp.17916 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.17916 rm -f tmp.17916 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e008 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e008 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18002 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_03:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.18002 rm -f tmp.18002 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e009 set files = ( wrfinput_d01_2015-06-10_03:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e009 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18085 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.18085 rm -f tmp.18085 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.18085 rm -f tmp.18085 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e009 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e009 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18171 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.18171 rm -f tmp.18171 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e010 set files = ( wrfinput_d01_2015-06-10_03:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e010 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18247 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.18247 rm -f tmp.18247 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.18247 rm -f tmp.18247 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e010 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e010 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_d01_2015-06-10_03:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e001 wrfbdy_d01_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e002 wrfbdy_d01_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e003 wrfbdy_d01_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e004 wrfbdy_d01_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e005 wrfbdy_d01_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e006 wrfbdy_d01_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e007 wrfbdy_d01_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e008 wrfbdy_d01_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e009 wrfbdy_d01_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e010 wrfbdy_d01_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + rm -rf perturb_chem_emiss_CORR_RT_CONST.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + LE_DATE=2015061004 + export LE_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061003 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18757 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_14321.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147767 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061003 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18971 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_13816.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147768 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/airnow_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 03 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=03 + export L_HH + D_DATE=2015061003 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=03 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=03 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=02 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=03 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061003.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061003.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/tolnet_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 03 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=03 + export L_HH + D_DATE=2015061003 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=03 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=03 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=02 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=03 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061003.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061003.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/prepbufr_met_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061003 obs_seq_prep_2015061003.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/combine_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/prepbufr_met_obs/obs_seq_prep_2015061003.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/prepbufr_met_obs/obs_seq_prep_2015061003.out ./obs_seq_MET_2015061003.out + FILE_LIST[1]=obs_seq_MET_2015061003.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/airnow_o3_obs/obs_seq_airnow_o3_2015061003.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/airnow_o3_obs/obs_seq_airnow_o3_2015061003.out ./obs_seq_AIR_O3_2015061003.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061003.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/tolnet_o3_obs/obs_seq_tolnet_o3_2015061003.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/tolnet_o3_obs/obs_seq_tolnet_o3_2015061003.out ./obs_seq_TOL_O3_2015061003.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061003.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061003.out\',\'obs_seq_AIR_O3_2015061003.out\',\'obs_seq_TOL_O3_2015061003.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=9000 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=12600 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 0 1 37 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=9000 which is Gregorian day: 2015 Jun 10 02:30:00 Excluding observations after: day=151370, sec=12600 which is Gregorian day: 2015 Jun 10 03:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061003.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061003.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061003.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 1060 Number of obs really inserted : 1060 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061003.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 1060 Number of obs to be inserted : 941 Number of obs really inserted : 941 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 2001 Actual number of obs in the new seq file : 2001 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=10800 Gregorian day: 2015 Jun 10 03:00:00 Last obs time: day=151370, sec=12600 Gregorian day: 2015 Jun 10 03:30:00 Number of obs processed : 2001 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 11 obs RADIOSONDE_V_WIND_COMPONENT 11 obs RADIOSONDE_TEMPERATURE 11 obs RADIOSONDE_SPECIFIC_HUMIDITY 11 obs AIRCRAFT_U_WIND_COMPONENT 1 obs AIRCRAFT_V_WIND_COMPONENT 1 obs AIRCRAFT_TEMPERATURE 33 obs MARINE_SFC_U_WIND_COMPONENT 218 obs MARINE_SFC_V_WIND_COMPONENT 218 obs MARINE_SFC_TEMPERATURE 247 obs MARINE_SFC_SPECIFIC_HUMIDITY 35 obs RADIOSONDE_SURFACE_ALTIMETER 1 obs MARINE_SFC_ALTIMETER 262 obs AIRNOW_O3 941 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 0 1 37 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061003.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/preprocess_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/combine_obs/obs_seq_comb_2015061003.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 3875_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 10800 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147769 + mv obs_seq.new obs_seq_comb_filtered_2015061003.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061003 -eq 2015061001 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/preprocess_obs/obs_seq_comb_filtered_2015061003.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/preprocess_obs/obs_seq_comb_filtered_2015061003.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_03:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_03:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_03:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_03:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_03:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_03:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_03:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_03:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_03:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_03:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e001 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e002 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e003 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e004 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e005 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e006 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e007 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e008 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e009 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e010 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e001 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22885 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_1630.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147771 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e002 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22889 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_25695.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147772 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e003 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22893 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_23729.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147773 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e004 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22897 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_13566.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147774 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e005 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22901 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_30128.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147775 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e006 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22905 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_27996.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147776 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e007 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22909 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_17552.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147777 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e008 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22913 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_405.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147778 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e009 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22917 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_1864.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147779 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_wrf_e010 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22921 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_6985.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147780 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + true + [[ 2015061003 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061003 -ne 2015061001 ]] + [[ 2 != 0 ]] + INF_OUT_FILE_NAME_PRIOR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/prior_inflate_ic_new + export INF_OUT_FILE_NAME_PRIOR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/dart_filter/prior_inflate_ic_new prior_inflate_ic_old + [[ 0 != 0 ]] + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + (( temp[1]=9000+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=9001 + export NL_FIRST_OBS_SECONDS + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=12600 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=12925 + JOBRND=3875_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=3875_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=23325 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 3875_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_15993.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147781 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24028 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_18908.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147783 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24239 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_9035.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147784 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24451 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_14627.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147785 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24662 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_4588.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147786 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24874 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_2448.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147787 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25085 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_11907.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147788 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25296 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_21752.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147789 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25507 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_28204.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147790 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25722 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_1906.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147791 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061002/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_03:00:00 wrfinput_d01 + LL_DATE=2015061003 + export LL_DATE + LL_END_DATE=2015061003 + export LL_END_DATE + echo 2015061003 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061003 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061003 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061003 + cut -c9-10 + LL_HH=03 + export LL_HH + LL_FILE_DATE=2015-06-10_03:00:00 + export LL_FILE_DATE + [[ 2015061003 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25933 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_22042.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147792 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-10_03:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-10_03:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-10_03:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-10_03:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-10_03:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-10_03:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-10_03:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-10_03:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-10_03:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-10_03:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e001 wrfbdy_d01_2015-06-10_03:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e002 wrfbdy_d01_2015-06-10_03:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e003 wrfbdy_d01_2015-06-10_03:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e004 wrfbdy_d01_2015-06-10_03:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e005 wrfbdy_d01_2015-06-10_03:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e006 wrfbdy_d01_2015-06-10_03:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e007 wrfbdy_d01_2015-06-10_03:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e008 wrfbdy_d01_2015-06-10_03:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e009 wrfbdy_d01_2015-06-10_03:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e010 wrfbdy_d01_2015-06-10_03:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/ensemble_mean_input ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + TRANDOM=12925 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e001 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e001 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e001 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e001 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e001 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28393 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31329.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147877 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e002 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e002 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e002 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e002 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e002 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e002 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e002 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e002 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28496 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_25706.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147878 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e003 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e003 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e003 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e003 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e003 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e003 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e003 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e003 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28607 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_19773.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147879 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e004 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e004 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e004 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e004 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e004 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e004 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e004 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e004 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28710 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_2305.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147880 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e005 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e005 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e005 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e005 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e005 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e005 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e005 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e005 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28812 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31854.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147881 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e006 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e006 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e006 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e006 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e006 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e006 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e006 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e006 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28915 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_26899.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147882 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e007 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e007 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e007 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e007 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e007 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e007 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e007 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e007 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29018 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_5709.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147883 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e008 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e008 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e008 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e008 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e008 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e008 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e008 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e008 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29122 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31078.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147884 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e009 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e009 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e009 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e009 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e009 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e009 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e009 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e009 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29228 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_12434.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147885 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e010 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e010 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e010 wrfchemi_d01_2015-06-10_03:00:00 + [[ 2015061003 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e010 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e010 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e010 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e010 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e010 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 04,04, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29453 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_10890.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147886 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/ensemble_mean_output ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/ensemble_mean_output + [[ 2015061003 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + export OUTPUT_DIR + rm -rf wrfout_d01_0001 wrfout_d01_0002 wrfout_d01_0003 wrfout_d01_0004 wrfout_d01_0005 wrfout_d01_0006 wrfout_d01_0007 wrfout_d01_0008 wrfout_d01_0009 wrfout_d01_0010 wrfout_d01_2015061003_mean wrfout_d01_2015061004_mean + P_DATE=2015061003 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_END_DATE=2015061004 + export P_END_DATE + [[ 2015061003 -le 2015061004 ]] + cut -c1-4 + echo 2015061003 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061003_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061004 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061004 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061004 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-10_04:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061004_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061004 ]] + CYCLE_DATE=2015061004 + export CYCLE_DATE + [[ 2015061004 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061004 + export DATE + cut -c1-4 + echo 2015061004 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061004 + YY=15 + export YY + cut -c5-6 + echo 2015061004 + MM=06 + export MM + cut -c7-8 + echo 2015061004 + DD=10 + export DD + cut -c9-10 + echo 2015061004 + HH=04 + export HH + DATE_SHORT=15061004 + export DATE_SHORT + FILE_DATE=2015-06-10_04:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -1 + 2> /dev/null + PAST_DATE=2015061003 + export PAST_DATE + cut -c1-4 + echo 2015061003 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061003 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061003 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061003 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061003 + PAST_HH=03 + export PAST_HH + PAST_FILE_DATE=2015-06-10_03:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + NEXT_DATE=2015061005 + export NEXT_DATE + cut -c1-4 + echo 2015061005 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061005 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061005 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061005 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061005 + NEXT_HH=05 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_05:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=04 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 04 + 0 )) + [[ 04 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=04 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 04 + 0 )) + D_DATE=2015061004 + export D_DATE + echo 2015061004 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 14400 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=14400 + export SEC_GREG + echo 2015061005 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 18000 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=18000 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100330 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100330 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100330 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100330 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100330 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100330 + ASIM_MIN_HH=03 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100430 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100430 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100430 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100430 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100430 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100430 + ASIM_MAX_HH=04 + export ASIM_MAX_HH + echo 201506100330 201506100330 + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=12600 + export ASIM_MIN_SEC_GREG + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=16200 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061004 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061004 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + END_DATE=2015061005 + export END_DATE + cut -c1-4 + echo 2015061004 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061004 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061004 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061004 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061004 + START_HOUR=04 + export START_HOUR + START_FILE_DATE=2015-06-10_04:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061005 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061005 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061005 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061005 + END_HOUR=05 + export END_HOUR + END_FILE_DATE=2015-06-10_05:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=04,04 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=05,05 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + (( temp[1]=12600+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=12601 + export NL_FIRST_OBS_SECONDS + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=16200 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061004 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=4 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=4 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=18000 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100330 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100430 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100330 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100330 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100330 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100330 + ASIM_MN_HH=03 + export ASIM_MN_HH + cut -c1-4 + echo 201506100430 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100430 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100430 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100430 + ASIM_MX_HH=04 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + E_DATE=2015061005 + export E_DATE + cut -c1-4 + echo 2015061005 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061005 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061005 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061005 + E_HH=05 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061004 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 2 + 2> /dev/null + P_END_DATE=2015061006 + export P_END_DATE + [[ 2015061004 -le 2015061006 ]] + cut -c1-4 + echo 2015061004 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061004 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061004 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061004 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-10_04:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_04:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061006 ]] + cut -c1-4 + echo 2015061005 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061005 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061005 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061005 + P_HH=05 + export P_HH + P_FILE_DATE=2015-06-10_05:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_05:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061006 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061006 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061006 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-10_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061006 ]] + P_DATE=2015061004 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_END_DATE=2015061005 + export P_END_DATE + [[ 2015061004 -le 2015061005 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061004 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + cut -c1-4 + echo 2015061004 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061004 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061004 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061004 + L_START_HOUR=04 + export L_START_HOUR + cut -c1-4 + echo 2015061005 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061005 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061005 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061005 + L_END_HOUR=05 + export L_END_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_START_HOUR=04,04 + export NL_START_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_END_HOUR=05,05 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31021 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_4890.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147962 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061005 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061005 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + cut -c1-4 + echo 2015061005 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061005 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061005 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061005 + L_START_HOUR=05 + export L_START_HOUR + cut -c1-4 + echo 2015061006 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061006 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061006 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061006 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_START_HOUR=05,05 + export NL_START_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31228 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_9743.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147965 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061005 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061004 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + cut -c1-4 + echo 2015061004 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061004 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061004 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061004 + L_START_HOUR=04 + export L_START_HOUR + cut -c1-4 + echo 2015061005 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061005 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061005 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061005 + L_END_HOUR=05 + export L_END_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_START_HOUR=04,04 + export NL_START_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_END_HOUR=05,05 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_END_DATE + P_DATE=2015061004 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_END_DATE=2015061005 + export P_END_DATE + [[ 2015061004 -le 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_04:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4040.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31340 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10203.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147967 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19421.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31367 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8234.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147968 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28052.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31396 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29154.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147969 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1727.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31423 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1754.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147970 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17826.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31451 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14227.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147971 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11006.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31479 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23149.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147972 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4615.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31506 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27820.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147973 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14928.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31534 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_984.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147974 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15408.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31561 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22581.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147975 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3308.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31589 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13400.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147976 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_05:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10203.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + echo 2015061004 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31680 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32734.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147977 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8234.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31707 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16330.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147978 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29154.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31735 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29103.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147979 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1754.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31762 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19307.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147980 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14227.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31790 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11044.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147981 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23149.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31818 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18307.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147982 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27820.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31845 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28675.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147983 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_984.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31873 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21777.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147984 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22581.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31900 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29347.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147985 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13400.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31928 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23958.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147986 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061005 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=12925 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32261 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28736.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147991 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=12925 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32540 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_24518.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147993 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=12925 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32752 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15282.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147995 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=12925 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=500 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16858.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147997 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=12925 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=717 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11018.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147999 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=12925 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=934 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12722.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148001 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=12925 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1145 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20916.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148002 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=12925 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1357 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8828.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148004 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=12925 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1573 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13884.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148006 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=12925 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1785 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12818.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148008 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + LE_DATE=2015061005 + export LE_DATE + [[ 2015061004 -le 2015061005 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061004 -eq 2015061004 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1860 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_17510.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148009 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_04:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061005 -eq 2015061004 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3730 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_31189.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148017 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_05:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + rm -rf GLOBAL_FINNv15_2014_MOZ4_7112014.txt GLOBAL_FINNv15_2015_MOZ4_11032016.txt GLOBAL_FINNv15_2016_MOZ4_11022016.txt GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=12925 + JOBRND=3875_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=3875_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6474 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_8460.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148048 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_04:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_04:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_04:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_04:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_05:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_05:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_05:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_05:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + LE_DATE=2015061005 + export LE_DATE + [[ 2015061004 -le 2015061005 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_04:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_05:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + echo 'AAA01 ' 2015061004 AAA01 2015061004 + echo 'AAA02 ' 2015061000 AAA02 2015061000 + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 3875_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148079 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_04:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_04:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 ./. + mv wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e000 + mv wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_d01_2015-06-10_04:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8792 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_04:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.8792 rm -f tmp.8792 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e000 set files = ( wrfinput_d01_2015-06-10_04:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e000 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8874 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.8874 rm -f tmp.8874 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.8874 rm -f tmp.8874 if ( wrfinput_d01_2015-06-10_04:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e000 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e000 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01_2015-06-10_04:00:00 + mv wrfbdy_d01_2015-06-10_04:00:00.e000 wrfbdy_d01_2015-06-10_04:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8967 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_04:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8967 rm -f tmp.8967 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e001 set files = ( wrfinput_d01_2015-06-10_04:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e001 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9168 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.9168 rm -f tmp.9168 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9168 rm -f tmp.9168 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e001 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e001 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9254 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_04:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.9254 rm -f tmp.9254 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e002 set files = ( wrfinput_d01_2015-06-10_04:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e002 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9331 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.9331 rm -f tmp.9331 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9331 rm -f tmp.9331 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e002 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e002 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9421 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_04:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.9421 rm -f tmp.9421 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e003 set files = ( wrfinput_d01_2015-06-10_04:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e003 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9498 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.9498 rm -f tmp.9498 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9498 rm -f tmp.9498 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e003 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e003 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9586 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_04:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.9586 rm -f tmp.9586 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e004 set files = ( wrfinput_d01_2015-06-10_04:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e004 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9663 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.9663 rm -f tmp.9663 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9663 rm -f tmp.9663 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e004 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e004 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9753 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_04:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.9753 rm -f tmp.9753 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e005 set files = ( wrfinput_d01_2015-06-10_04:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e005 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9830 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.9830 rm -f tmp.9830 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9830 rm -f tmp.9830 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e005 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e005 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9916 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_04:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.9916 rm -f tmp.9916 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e006 set files = ( wrfinput_d01_2015-06-10_04:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e006 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9994 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.9994 rm -f tmp.9994 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9994 rm -f tmp.9994 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e006 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e006 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10081 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_04:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.10081 rm -f tmp.10081 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e007 set files = ( wrfinput_d01_2015-06-10_04:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e007 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10162 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.10162 rm -f tmp.10162 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.10162 rm -f tmp.10162 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e007 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e007 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10249 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_04:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.10249 rm -f tmp.10249 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e008 set files = ( wrfinput_d01_2015-06-10_04:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e008 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10329 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.10329 rm -f tmp.10329 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.10329 rm -f tmp.10329 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e008 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e008 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10415 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_04:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.10415 rm -f tmp.10415 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e009 set files = ( wrfinput_d01_2015-06-10_04:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e009 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10618 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.10618 rm -f tmp.10618 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.10618 rm -f tmp.10618 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e009 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e009 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10704 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.10704 rm -f tmp.10704 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e010 set files = ( wrfinput_d01_2015-06-10_04:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e010 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10782 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.10782 rm -f tmp.10782 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.10782 rm -f tmp.10782 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e010 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e010 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_d01_2015-06-10_04:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e001 wrfbdy_d01_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e002 wrfbdy_d01_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e003 wrfbdy_d01_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e004 wrfbdy_d01_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e005 wrfbdy_d01_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e006 wrfbdy_d01_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e007 wrfbdy_d01_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e008 wrfbdy_d01_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e009 wrfbdy_d01_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e010 wrfbdy_d01_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + rm -rf perturb_chem_emiss_CORR_RT_CONST.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + LE_DATE=2015061005 + export LE_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061004 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11174 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_15185.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148093 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061004 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11390 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_5848.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148094 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/airnow_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 04 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=04 + export L_HH + D_DATE=2015061004 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=04 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=04 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=03 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=04 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061004.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061004.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/tolnet_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 04 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=04 + export L_HH + D_DATE=2015061004 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=04 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=04 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=03 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=04 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061004.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061004.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/prepbufr_met_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + echo 2015061006 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061004 obs_seq_prep_2015061004.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/combine_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/prepbufr_met_obs/obs_seq_prep_2015061004.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/prepbufr_met_obs/obs_seq_prep_2015061004.out ./obs_seq_MET_2015061004.out + FILE_LIST[1]=obs_seq_MET_2015061004.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/airnow_o3_obs/obs_seq_airnow_o3_2015061004.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/airnow_o3_obs/obs_seq_airnow_o3_2015061004.out ./obs_seq_AIR_O3_2015061004.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061004.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/tolnet_o3_obs/obs_seq_tolnet_o3_2015061004.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/tolnet_o3_obs/obs_seq_tolnet_o3_2015061004.out ./obs_seq_TOL_O3_2015061004.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061004.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061004.out\',\'obs_seq_AIR_O3_2015061004.out\',\'obs_seq_TOL_O3_2015061004.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=12600 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=16200 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 1 48 13 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=12600 which is Gregorian day: 2015 Jun 10 03:30:00 Excluding observations after: day=151370, sec=16200 which is Gregorian day: 2015 Jun 10 04:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061004.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061004.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061004.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 2881 Number of obs really inserted : 2881 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061004.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 2881 Number of obs to be inserted : 929 Number of obs really inserted : 929 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 3810 Actual number of obs in the new seq file : 3810 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=12661 Gregorian day: 2015 Jun 10 03:31:01 Last obs time: day=151370, sec=16200 Gregorian day: 2015 Jun 10 04:30:00 Number of obs processed : 3810 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 35 obs RADIOSONDE_V_WIND_COMPONENT 35 obs RADIOSONDE_TEMPERATURE 34 obs RADIOSONDE_SPECIFIC_HUMIDITY 33 obs AIRCRAFT_U_WIND_COMPONENT 8 obs AIRCRAFT_V_WIND_COMPONENT 8 obs AIRCRAFT_TEMPERATURE 72 obs MARINE_SFC_U_WIND_COMPONENT 554 obs MARINE_SFC_V_WIND_COMPONENT 554 obs MARINE_SFC_TEMPERATURE 613 obs MARINE_SFC_SPECIFIC_HUMIDITY 158 obs LAND_SFC_U_WIND_COMPONENT 25 obs LAND_SFC_V_WIND_COMPONENT 25 obs LAND_SFC_TEMPERATURE 25 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs RADIOSONDE_SURFACE_ALTIMETER 1 obs MARINE_SFC_ALTIMETER 652 obs LAND_SFC_ALTIMETER 25 obs AIRNOW_O3 929 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 1 48 13 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061004.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/preprocess_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/combine_obs/obs_seq_comb_2015061004.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 3875_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 14400 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148101 + mv obs_seq.new obs_seq_comb_filtered_2015061004.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061004 -eq 2015061001 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/preprocess_obs/obs_seq_comb_filtered_2015061004.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/preprocess_obs/obs_seq_comb_filtered_2015061004.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_04:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_04:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_04:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_04:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_04:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_04:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_04:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_04:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_04:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_04:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e001 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e002 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e003 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e004 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e005 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e006 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e007 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e008 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e009 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e010 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e001 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15238 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_29759.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148102 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e002 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15242 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_31423.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148103 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e003 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15246 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_10980.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148104 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e004 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15250 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_21123.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148105 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e005 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15254 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_23519.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148106 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e006 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15258 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_1766.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148107 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e007 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15262 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_11970.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148108 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e008 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15266 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_1819.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148109 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e009 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15270 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_26143.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148110 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_wrf_e010 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15274 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_9030.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148111 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + true + [[ 2015061004 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061004 -ne 2015061001 ]] + [[ 2 != 0 ]] + INF_OUT_FILE_NAME_PRIOR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/prior_inflate_ic_new + export INF_OUT_FILE_NAME_PRIOR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/dart_filter/prior_inflate_ic_new prior_inflate_ic_old + [[ 0 != 0 ]] + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + (( temp[1]=12600+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=12601 + export NL_FIRST_OBS_SECONDS + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=16200 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=12925 + JOBRND=3875_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=3875_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15688 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 3875_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_18827.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148112 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16391 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_10728.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148144 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16606 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_29579.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148145 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16818 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_6011.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148146 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17030 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_19650.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148147 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17241 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_11098.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148148 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17452 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_19805.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148149 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17664 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_14732.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148150 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17876 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_24994.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148151 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18092 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_10802.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148152 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061003/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_04:00:00 wrfinput_d01 + LL_DATE=2015061004 + export LL_DATE + LL_END_DATE=2015061004 + export LL_END_DATE + echo 2015061004 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061004 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061004 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061004 + cut -c9-10 + LL_HH=04 + export LL_HH + LL_FILE_DATE=2015-06-10_04:00:00 + export LL_FILE_DATE + [[ 2015061004 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18303 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_25801.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148153 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-10_04:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-10_04:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-10_04:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-10_04:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-10_04:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-10_04:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-10_04:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-10_04:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-10_04:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-10_04:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e001 wrfbdy_d01_2015-06-10_04:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e002 wrfbdy_d01_2015-06-10_04:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e003 wrfbdy_d01_2015-06-10_04:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e004 wrfbdy_d01_2015-06-10_04:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e005 wrfbdy_d01_2015-06-10_04:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e006 wrfbdy_d01_2015-06-10_04:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e007 wrfbdy_d01_2015-06-10_04:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e008 wrfbdy_d01_2015-06-10_04:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e009 wrfbdy_d01_2015-06-10_04:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e010 wrfbdy_d01_2015-06-10_04:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/ensemble_mean_input ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + TRANDOM=12925 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e001 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e001 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e001 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e001 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e001 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20820 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_27547.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148203 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e002 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e002 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e002 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e002 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e002 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e002 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e002 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e002 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20925 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_9020.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148204 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e003 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e003 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e003 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e003 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e003 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e003 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e003 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e003 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=21027 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_21936.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148205 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e004 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e004 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e004 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e004 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e004 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e004 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e004 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e004 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=21134 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_16193.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148206 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e005 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e005 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e005 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e005 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e005 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e005 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e005 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e005 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=21301 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_28715.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148207 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e006 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e006 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e006 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e006 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e006 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e006 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e006 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e006 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=21463 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_19442.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148208 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e007 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e007 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e007 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e007 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e007 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e007 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e007 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e007 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=21567 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_22966.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148209 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e008 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e008 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e008 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e008 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e008 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e008 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e008 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e008 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=21670 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_17335.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148210 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e009 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e009 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e009 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e009 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e009 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e009 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e009 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e009 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=21777 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_29915.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148211 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e010 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e010 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e010 wrfchemi_d01_2015-06-10_04:00:00 + [[ 2015061004 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e010 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e010 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e010 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e010 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e010 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 04,04, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 05,05, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=21879 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_24812.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148212 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/ensemble_mean_output ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/ensemble_mean_output + [[ 2015061004 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + export OUTPUT_DIR + rm -rf wrfout_d01_0001 wrfout_d01_0002 wrfout_d01_0003 wrfout_d01_0004 wrfout_d01_0005 wrfout_d01_0006 wrfout_d01_0007 wrfout_d01_0008 wrfout_d01_0009 wrfout_d01_0010 wrfout_d01_2015061004_mean wrfout_d01_2015061005_mean + P_DATE=2015061004 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_END_DATE=2015061005 + export P_END_DATE + [[ 2015061004 -le 2015061005 ]] + cut -c1-4 + echo 2015061004 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061004 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061004 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061004 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-10_04:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061004_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061005 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061005 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061005 + P_HH=05 + export P_HH + P_FILE_DATE=2015-06-10_05:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061005_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061005 ]] + CYCLE_DATE=2015061005 + export CYCLE_DATE + [[ 2015061005 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061005 + export DATE + cut -c1-4 + echo 2015061005 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061005 + YY=15 + export YY + cut -c5-6 + echo 2015061005 + MM=06 + export MM + cut -c7-8 + echo 2015061005 + DD=10 + export DD + cut -c9-10 + echo 2015061005 + HH=05 + export HH + DATE_SHORT=15061005 + export DATE_SHORT + FILE_DATE=2015-06-10_05:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -1 + 2> /dev/null + PAST_DATE=2015061004 + export PAST_DATE + cut -c1-4 + echo 2015061004 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061004 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061004 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061004 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061004 + PAST_HH=04 + export PAST_HH + PAST_FILE_DATE=2015-06-10_04:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + NEXT_DATE=2015061006 + export NEXT_DATE + cut -c1-4 + echo 2015061006 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061006 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061006 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061006 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061006 + NEXT_HH=06 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_06:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=05 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 05 + 0 )) + [[ 05 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=05 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 05 + 0 )) + D_DATE=2015061005 + export D_DATE + echo 2015061005 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 18000 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=18000 + export SEC_GREG + echo 2015061006 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 21600 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=21600 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100430 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100430 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100430 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100430 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100430 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100430 + ASIM_MIN_HH=04 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100530 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100530 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100530 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100530 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100530 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100530 + ASIM_MAX_HH=05 + export ASIM_MAX_HH + echo 201506100430 201506100430 + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=16200 + export ASIM_MIN_SEC_GREG + echo 201506100530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 19800 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=19800 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061005 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061005 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + END_DATE=2015061006 + export END_DATE + cut -c1-4 + echo 2015061005 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061005 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061005 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061005 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061005 + START_HOUR=05 + export START_HOUR + START_FILE_DATE=2015-06-10_05:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061006 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061006 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061006 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061006 + END_HOUR=06 + export END_HOUR + END_FILE_DATE=2015-06-10_06:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=05,05 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + (( temp[1]=16200+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=16201 + export NL_FIRST_OBS_SECONDS + echo 201506100530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 19800 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=19800 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061005 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=5 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=5 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=21600 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100430 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100530 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100430 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100430 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100430 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100430 + ASIM_MN_HH=04 + export ASIM_MN_HH + cut -c1-4 + echo 201506100530 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100530 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100530 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100530 + ASIM_MX_HH=05 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + E_DATE=2015061006 + export E_DATE + cut -c1-4 + echo 2015061006 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061006 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061006 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061006 + E_HH=06 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061005 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 2 + 2> /dev/null + P_END_DATE=2015061007 + export P_END_DATE + [[ 2015061005 -le 2015061007 ]] + cut -c1-4 + echo 2015061005 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061005 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061005 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061005 + P_HH=05 + export P_HH + P_FILE_DATE=2015-06-10_05:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_05:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061007 ]] + cut -c1-4 + echo 2015061006 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061006 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061006 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061006 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-10_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061007 ]] + cut -c1-4 + echo 2015061007 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061007 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061007 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061007 + P_HH=07 + export P_HH + P_FILE_DATE=2015-06-10_07:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_07:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061007 ]] + P_DATE=2015061005 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_END_DATE=2015061006 + export P_END_DATE + [[ 2015061005 -le 2015061006 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061005 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + cut -c1-4 + echo 2015061005 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061005 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061005 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061005 + L_START_HOUR=05 + export L_START_HOUR + cut -c1-4 + echo 2015061006 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061006 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061006 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061006 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_START_HOUR=05,05 + export NL_START_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24865 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_9206.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148390 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061006 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061006 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + cut -c1-4 + echo 2015061006 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061006 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061006 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061006 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061007 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061007 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061007 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061007 + L_END_HOUR=07 + export L_END_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061007 + cut -c1-4 + echo 2015061007 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061007 + cut -c5-6 + echo 2015061007 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061007 + cut -c7-8 + echo 2015061007 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061007 + cut -c9-10 + echo 2015061007 + NL_END_HOUR=07,07 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_07:00:00\',\'2015-06-10_07:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25075 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_27955.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148395 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061006 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061005 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + cut -c1-4 + echo 2015061005 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061005 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061005 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061005 + L_START_HOUR=05 + export L_START_HOUR + cut -c1-4 + echo 2015061006 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061006 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061006 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061006 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_START_HOUR=05,05 + export NL_START_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_END_DATE + P_DATE=2015061005 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_END_DATE=2015061006 + export P_END_DATE + [[ 2015061005 -le 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_05:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3155.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25185 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31276.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148400 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7375.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25213 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7022.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148401 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7580.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25241 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16889.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148402 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11903.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25268 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10655.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148403 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1578.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25296 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21752.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148404 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29381.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25323 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_968.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148405 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30581.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25351 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20731.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148407 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23699.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25379 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17663.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148408 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17832.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25406 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32372.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148409 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14018.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25434 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28823.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148410 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_06:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31276.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25525 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2348.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148412 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7022.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25553 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26429.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148413 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16889.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25582 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5836.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148414 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10655.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25609 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19193.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148415 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21752.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25637 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3815.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148416 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_968.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25664 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6651.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148417 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20731.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25692 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4545.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148418 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17663.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25720 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2854.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148419 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32372.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25747 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9469.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148420 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28823.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25775 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1130.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148421 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061006 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=12925 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26037 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_17339.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148422 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=12925 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26248 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_24027.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148423 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=12925 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26583 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27684.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148424 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=12925 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26794 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25780.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148425 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=12925 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27005 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8285.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148426 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=12925 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27220 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26233.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148428 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=12925 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27433 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27194.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148429 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=12925 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27645 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12678.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148431 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=12925 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27857 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9936.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148432 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=12925 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28068 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_23833.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148433 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + LE_DATE=2015061006 + export LE_DATE + [[ 2015061005 -le 2015061006 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061005 -eq 2015061005 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28145 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_3963.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148435 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_05:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061006 -eq 2015061005 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29868 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_22966.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148472 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_06:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + rm -rf GLOBAL_FINNv15_2014_MOZ4_7112014.txt GLOBAL_FINNv15_2015_MOZ4_11032016.txt GLOBAL_FINNv15_2016_MOZ4_11022016.txt GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=12925 + JOBRND=3875_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=3875_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31586 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_23003.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148660 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_05:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_05:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_05:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_05:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_06:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_06:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_06:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_06:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + LE_DATE=2015061006 + export LE_DATE + [[ 2015061005 -le 2015061006 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_05:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_06:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + echo 'AAA01 ' 2015061005 AAA01 2015061005 + echo 'AAA02 ' 2015061000 AAA02 2015061000 + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 3875_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148662 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_05:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_05:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 ./. + mv wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e000 + mv wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_d01_2015-06-10_05:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32022 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_05:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.32022 rm -f tmp.32022 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e000 set files = ( wrfinput_d01_2015-06-10_05:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e000 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32221 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.32221 rm -f tmp.32221 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.32221 rm -f tmp.32221 if ( wrfinput_d01_2015-06-10_05:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e000 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e000 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01_2015-06-10_05:00:00 + mv wrfbdy_d01_2015-06-10_05:00:00.e000 wrfbdy_d01_2015-06-10_05:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32310 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_05:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.32310 rm -f tmp.32310 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e001 set files = ( wrfinput_d01_2015-06-10_05:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e001 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32392 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.32392 rm -f tmp.32392 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.32392 rm -f tmp.32392 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e001 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e001 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32478 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_05:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.32478 rm -f tmp.32478 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e002 set files = ( wrfinput_d01_2015-06-10_05:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e002 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32556 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.32556 rm -f tmp.32556 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.32556 rm -f tmp.32556 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e002 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e002 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32642 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_05:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.32642 rm -f tmp.32642 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e003 set files = ( wrfinput_d01_2015-06-10_05:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e003 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32723 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.32723 rm -f tmp.32723 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.32723 rm -f tmp.32723 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e003 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e003 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.347 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_05:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.347 rm -f tmp.347 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e004 set files = ( wrfinput_d01_2015-06-10_05:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e004 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.426 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.426 rm -f tmp.426 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.426 rm -f tmp.426 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e004 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e004 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.512 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_05:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.512 rm -f tmp.512 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e005 set files = ( wrfinput_d01_2015-06-10_05:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e005 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.593 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.593 rm -f tmp.593 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.593 rm -f tmp.593 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e005 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e005 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.681 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_05:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.681 rm -f tmp.681 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e006 set files = ( wrfinput_d01_2015-06-10_05:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e006 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.760 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.760 rm -f tmp.760 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.760 rm -f tmp.760 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e006 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e006 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.848 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_05:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.848 rm -f tmp.848 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e007 set files = ( wrfinput_d01_2015-06-10_05:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e007 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.932 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.932 rm -f tmp.932 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.932 rm -f tmp.932 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e007 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e007 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1018 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_05:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.1018 rm -f tmp.1018 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e008 set files = ( wrfinput_d01_2015-06-10_05:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e008 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1221 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.1221 rm -f tmp.1221 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1221 rm -f tmp.1221 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e008 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e008 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1308 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_05:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.1308 rm -f tmp.1308 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e009 set files = ( wrfinput_d01_2015-06-10_05:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e009 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1390 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.1390 rm -f tmp.1390 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1390 rm -f tmp.1390 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e009 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e009 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1476 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1476 rm -f tmp.1476 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e010 set files = ( wrfinput_d01_2015-06-10_05:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e010 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1554 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1554 rm -f tmp.1554 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1554 rm -f tmp.1554 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e010 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e010 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_d01_2015-06-10_05:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e001 wrfbdy_d01_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e002 wrfbdy_d01_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e003 wrfbdy_d01_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e004 wrfbdy_d01_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e005 wrfbdy_d01_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e006 wrfbdy_d01_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e007 wrfbdy_d01_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e008 wrfbdy_d01_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e009 wrfbdy_d01_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e010 wrfbdy_d01_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + rm -rf perturb_chem_emiss_CORR_RT_CONST.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + LE_DATE=2015061006 + export LE_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061005 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1946 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_31524.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148727 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061005 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2159 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_18959.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148728 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/airnow_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 05 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=05 + export L_HH + D_DATE=2015061005 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=05 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=05 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=04 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=05 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061005.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061005.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/tolnet_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 05 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=05 + export L_HH + D_DATE=2015061005 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=05 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=05 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=04 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=05 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061005.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061005.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/prepbufr_met_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + echo 2015061006 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061005 obs_seq_prep_2015061005.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/combine_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/prepbufr_met_obs/obs_seq_prep_2015061005.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/prepbufr_met_obs/obs_seq_prep_2015061005.out ./obs_seq_MET_2015061005.out + FILE_LIST[1]=obs_seq_MET_2015061005.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/airnow_o3_obs/obs_seq_airnow_o3_2015061005.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/airnow_o3_obs/obs_seq_airnow_o3_2015061005.out ./obs_seq_AIR_O3_2015061005.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061005.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/tolnet_o3_obs/obs_seq_tolnet_o3_2015061005.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/tolnet_o3_obs/obs_seq_tolnet_o3_2015061005.out ./obs_seq_TOL_O3_2015061005.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061005.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061005.out\',\'obs_seq_AIR_O3_2015061005.out\',\'obs_seq_TOL_O3_2015061005.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=16200 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=19800 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 3 20 34 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=16200 which is Gregorian day: 2015 Jun 10 04:30:00 Excluding observations after: day=151370, sec=19800 which is Gregorian day: 2015 Jun 10 05:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061005.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061005.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061005.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 16838 Number of obs really inserted : 16838 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061005.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 16838 Number of obs to be inserted : 916 Number of obs really inserted : 916 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 17754 Actual number of obs in the new seq file : 17754 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=16261 Gregorian day: 2015 Jun 10 04:31:01 Last obs time: day=151370, sec=19800 Gregorian day: 2015 Jun 10 05:30:00 Number of obs processed : 17754 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 43 obs RADIOSONDE_V_WIND_COMPONENT 43 obs RADIOSONDE_TEMPERATURE 35 obs RADIOSONDE_SPECIFIC_HUMIDITY 34 obs AIRCRAFT_U_WIND_COMPONENT 5 obs AIRCRAFT_V_WIND_COMPONENT 5 obs AIRCRAFT_TEMPERATURE 52 obs MARINE_SFC_U_WIND_COMPONENT 555 obs MARINE_SFC_V_WIND_COMPONENT 555 obs MARINE_SFC_TEMPERATURE 610 obs MARINE_SFC_SPECIFIC_HUMIDITY 155 obs LAND_SFC_U_WIND_COMPONENT 25 obs LAND_SFC_V_WIND_COMPONENT 25 obs LAND_SFC_TEMPERATURE 25 obs LAND_SFC_SPECIFIC_HUMIDITY 23 obs SAT_U_WIND_COMPONENT 6986 obs SAT_V_WIND_COMPONENT 6986 obs RADIOSONDE_SURFACE_ALTIMETER 1 obs MARINE_SFC_ALTIMETER 650 obs LAND_SFC_ALTIMETER 25 obs AIRNOW_O3 916 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 3 20 35 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061005.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/preprocess_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/combine_obs/obs_seq_comb_2015061005.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 3875_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 18000 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148754 + mv obs_seq.new obs_seq_comb_filtered_2015061005.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061005 -eq 2015061001 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/preprocess_obs/obs_seq_comb_filtered_2015061005.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/preprocess_obs/obs_seq_comb_filtered_2015061005.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_05:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_05:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_05:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_05:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_05:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_05:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_05:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_05:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_05:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_05:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e001 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e002 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e003 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e004 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e005 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e006 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e007 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e008 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e009 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e010 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e001 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6119 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_3162.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148755 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e002 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6123 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_16007.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148756 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e003 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6127 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_29493.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148757 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e004 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6131 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_3565.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148758 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e005 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6135 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_17119.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148759 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e006 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6139 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_13649.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148760 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e007 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6143 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_23282.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148761 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e008 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6147 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_32470.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148762 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e009 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6151 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_25711.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148763 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_wrf_e010 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6155 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_30882.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148764 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + true + [[ 2015061005 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061005 -ne 2015061001 ]] + [[ 2 != 0 ]] + INF_OUT_FILE_NAME_PRIOR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/prior_inflate_ic_new + export INF_OUT_FILE_NAME_PRIOR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/dart_filter/prior_inflate_ic_new prior_inflate_ic_old + [[ 0 != 0 ]] + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + (( temp[1]=16200+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=16201 + export NL_FIRST_OBS_SECONDS + echo 201506100530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 19800 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=19800 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=12925 + JOBRND=3875_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=3875_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6570 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 3875_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_7247.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148765 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7267 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_8147.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148776 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7480 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_28902.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148777 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7691 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_18406.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148778 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7902 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_13577.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148779 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8119 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_12337.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148780 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8329 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_18693.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148781 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8541 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_25371.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148782 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8752 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_6950.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148783 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8963 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_17723.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148784 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061004/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_05:00:00 wrfinput_d01 + LL_DATE=2015061005 + export LL_DATE + LL_END_DATE=2015061005 + export LL_END_DATE + echo 2015061005 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061005 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061005 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061005 + cut -c9-10 + LL_HH=05 + export LL_HH + LL_FILE_DATE=2015-06-10_05:00:00 + export LL_FILE_DATE + [[ 2015061005 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9174 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_26323.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148785 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-10_05:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-10_05:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-10_05:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-10_05:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-10_05:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-10_05:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-10_05:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-10_05:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-10_05:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-10_05:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e001 wrfbdy_d01_2015-06-10_05:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_05:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e002 wrfbdy_d01_2015-06-10_05:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_05:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e003 wrfbdy_d01_2015-06-10_05:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_05:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e004 wrfbdy_d01_2015-06-10_05:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_05:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e005 wrfbdy_d01_2015-06-10_05:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_05:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e006 wrfbdy_d01_2015-06-10_05:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_05:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e007 wrfbdy_d01_2015-06-10_05:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_05:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e008 wrfbdy_d01_2015-06-10_05:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_05:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e009 wrfbdy_d01_2015-06-10_05:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_05:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e010 wrfbdy_d01_2015-06-10_05:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_05:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/ensemble_mean_input ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + TRANDOM=12925 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e001 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e001 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e001 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19544 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_24983.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148866 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e002 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e002 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e002 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e002 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e002 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e002 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e002 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e002 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19648 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_22037.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148867 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e003 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e003 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e003 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e003 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e003 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e003 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e003 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e003 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19751 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_32386.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148868 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e004 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e004 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e004 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e004 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e004 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e004 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e004 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e004 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19853 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_25115.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148869 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e005 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e005 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e005 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e005 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e005 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e005 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e005 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e005 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19955 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_6197.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148870 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e006 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e006 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e006 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e006 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e006 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e006 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e006 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e006 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20059 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_22265.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148871 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e007 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e007 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e007 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e007 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e007 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e007 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e007 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e007 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20166 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_16293.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148872 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e008 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e008 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e008 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e008 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e008 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e008 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e008 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e008 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20357 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_26652.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148873 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e009 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e009 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e009 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e009 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e009 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e009 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e009 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e009 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20495 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_58.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148874 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e010 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e010 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e010 wrfchemi_d01_2015-06-10_05:00:00 + [[ 2015061005 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e010 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e010 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e010 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e010 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e010 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/wrfout_d01_2015-06-10_05:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/update_bc/wrfbdy_d01_2015-06-10_05:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 05,05, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20597 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_3305.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148875 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/ensemble_mean_output ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/ensemble_mean_output + [[ 2015061005 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + export OUTPUT_DIR + rm -rf wrfout_d01_0001 wrfout_d01_0002 wrfout_d01_0003 wrfout_d01_0004 wrfout_d01_0005 wrfout_d01_0006 wrfout_d01_0007 wrfout_d01_0008 wrfout_d01_0009 wrfout_d01_0010 wrfout_d01_2015061005_mean wrfout_d01_2015061006_mean + P_DATE=2015061005 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_END_DATE=2015061006 + export P_END_DATE + [[ 2015061005 -le 2015061006 ]] + cut -c1-4 + echo 2015061005 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061005 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061005 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061005 + P_HH=05 + export P_HH + P_FILE_DATE=2015-06-10_05:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061005_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061006 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061006 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061006 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-10_06:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061006_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061006 ]] + CYCLE_DATE=2015061006 + export CYCLE_DATE + [[ 2015061006 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061006 + export DATE + cut -c1-4 + echo 2015061006 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061006 + YY=15 + export YY + cut -c5-6 + echo 2015061006 + MM=06 + export MM + cut -c7-8 + echo 2015061006 + DD=10 + export DD + cut -c9-10 + echo 2015061006 + HH=06 + export HH + DATE_SHORT=15061006 + export DATE_SHORT + FILE_DATE=2015-06-10_06:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -1 + 2> /dev/null + PAST_DATE=2015061005 + export PAST_DATE + cut -c1-4 + echo 2015061005 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061005 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061005 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061005 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061005 + PAST_HH=05 + export PAST_HH + PAST_FILE_DATE=2015-06-10_05:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + NEXT_DATE=2015061007 + export NEXT_DATE + cut -c1-4 + echo 2015061007 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061007 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061007 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061007 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061007 + NEXT_HH=07 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_07:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=06 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 06 + 0 )) + [[ 06 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=06 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 06 + 0 )) + D_DATE=2015061006 + export D_DATE + echo 2015061006 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 21600 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=21600 + export SEC_GREG + echo 2015061007 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 25200 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=25200 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100530 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100530 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100530 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100530 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100530 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100530 + ASIM_MIN_HH=05 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100630 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100630 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100630 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100630 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100630 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100630 + ASIM_MAX_HH=06 + export ASIM_MAX_HH + echo 201506100530 201506100530 + echo 201506100530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 19800 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=19800 + export ASIM_MIN_SEC_GREG + echo 201506100630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 23400 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=23400 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061006 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061006 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + END_DATE=2015061007 + export END_DATE + cut -c1-4 + echo 2015061006 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061006 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061006 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061006 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061006 + START_HOUR=06 + export START_HOUR + START_FILE_DATE=2015-06-10_06:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061007 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061007 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061007 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061007 + END_HOUR=07 + export END_HOUR + END_FILE_DATE=2015-06-10_07:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=06,06 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=07,07 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 19800 + (( temp[1]=19800+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=19801 + export NL_FIRST_OBS_SECONDS + echo 201506100630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 23400 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=23400 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061006 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=6 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=6 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=25200 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100530 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100630 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100530 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100530 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100530 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100530 + ASIM_MN_HH=05 + export ASIM_MN_HH + cut -c1-4 + echo 201506100630 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100630 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100630 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100630 + ASIM_MX_HH=06 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + E_DATE=2015061007 + export E_DATE + cut -c1-4 + echo 2015061007 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061007 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061007 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061007 + E_HH=07 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061006 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 2 + 2> /dev/null + P_END_DATE=2015061008 + export P_END_DATE + [[ 2015061006 -le 2015061008 ]] + cut -c1-4 + echo 2015061006 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061006 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061006 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061006 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-10_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061008 ]] + cut -c1-4 + echo 2015061007 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061007 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061007 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061007 + P_HH=07 + export P_HH + P_FILE_DATE=2015-06-10_07:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_07:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061008 ]] + cut -c1-4 + echo 2015061008 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061008 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061008 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061008 + P_HH=08 + export P_HH + P_FILE_DATE=2015-06-10_08:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_08:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061008 ]] + P_DATE=2015061006 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_END_DATE=2015061007 + export P_END_DATE + [[ 2015061006 -le 2015061007 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061006 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + cut -c1-4 + echo 2015061006 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061006 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061006 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061006 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061007 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061007 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061007 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061007 + L_END_HOUR=07 + export L_END_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061007 + cut -c1-4 + echo 2015061007 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061007 + cut -c5-6 + echo 2015061007 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061007 + cut -c7-8 + echo 2015061007 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061007 + cut -c9-10 + echo 2015061007 + NL_END_HOUR=07,07 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_07:00:00\',\'2015-06-10_07:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28876 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_17649.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149036 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061007 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061007 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + cut -c1-4 + echo 2015061007 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061007 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061007 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061007 + L_START_HOUR=07 + export L_START_HOUR + cut -c1-4 + echo 2015061008 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061008 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061008 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061008 + L_END_HOUR=08 + export L_END_HOUR + cut -c1-4 + echo 2015061007 + cut -c1-4 + echo 2015061007 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061007 + cut -c5-6 + echo 2015061007 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061007 + cut -c7-8 + echo 2015061007 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061007 + cut -c9-10 + echo 2015061007 + NL_START_HOUR=07,07 + export NL_START_HOUR + cut -c1-4 + echo 2015061008 + cut -c1-4 + echo 2015061008 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061008 + cut -c5-6 + echo 2015061008 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061008 + cut -c7-8 + echo 2015061008 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061008 + cut -c9-10 + echo 2015061008 + NL_END_HOUR=08,08 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_07:00:00\',\'2015-06-10_07:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_08:00:00\',\'2015-06-10_08:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28963 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_6656.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149038 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061007 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061006 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + cut -c1-4 + echo 2015061006 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061006 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061006 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061006 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061007 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061007 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061007 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061007 + L_END_HOUR=07 + export L_END_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061007 + cut -c1-4 + echo 2015061007 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061007 + cut -c5-6 + echo 2015061007 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061007 + cut -c7-8 + echo 2015061007 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061007 + cut -c9-10 + echo 2015061007 + NL_END_HOUR=07,07 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_07:00:00\',\'2015-06-10_07:00:00\'' + export NL_END_DATE + P_DATE=2015061006 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_END_DATE=2015061007 + export P_END_DATE + [[ 2015061006 -le 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_06:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5348.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29189 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31481.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149039 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7767.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29218 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_248.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149040 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29213.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29246 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4563.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149041 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27210.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29273 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5460.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149042 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31370.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29301 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12420.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149043 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27238.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29332 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28756.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149044 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32041.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29360 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12149.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149045 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10749.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29388 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_680.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149046 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25517.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29415 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27182.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149047 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9108.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29443 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24561.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149048 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_07:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_07:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31481.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + echo 2015061006 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29535 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30354.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149079 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_248.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29563 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30465.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149080 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4563.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29590 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29503.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149081 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5460.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29619 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2499.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149082 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12420.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29647 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9095.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149083 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28756.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29674 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2357.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149084 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12149.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29702 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18462.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149085 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_680.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29729 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8328.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149086 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27182.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29757 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7266.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149087 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24561.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29784 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3577.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149088 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061007 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=12925 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30236 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11985.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149104 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=12925 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30472 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21045.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149120 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=12925 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30709 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_22323.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149121 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=12925 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30924 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1939.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149122 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=12925 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31136 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6331.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149123 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=12925 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31349 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28512.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149124 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=12925 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31560 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7209.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149125 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=12925 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31777 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27905.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149126 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=12925 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31988 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16540.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149127 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=12925 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32321 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11336.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149129 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + LE_DATE=2015061007 + export LE_DATE + [[ 2015061006 -le 2015061007 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061006 -eq 2015061006 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32394 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_10980.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149132 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_06:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d02_2015-06-10_07:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061007 -eq 2015061006 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1682 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_26729.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149149 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_07:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + rm -rf GLOBAL_FINNv15_2014_MOZ4_7112014.txt GLOBAL_FINNv15_2015_MOZ4_11032016.txt GLOBAL_FINNv15_2016_MOZ4_11022016.txt GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=12925 + JOBRND=3875_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=3875_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3389 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_19330.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149303 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_06:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_06:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_06:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_06:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_07:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_07:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_07:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_07:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + LE_DATE=2015061007 + export LE_DATE + [[ 2015061006 -le 2015061007 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_06:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_07:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_07:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + echo 'AAA01 ' 2015061006 AAA01 2015061006 + echo 'AAA02 ' 2015061000 AAA02 2015061000 + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_10:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 3875_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149304 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=06 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_06:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_06:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 ./. + mv wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e000 + mv wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_d01_2015-06-10_06:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3983 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.3983 rm -f tmp.3983 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e000 set files = ( wrfinput_d01_2015-06-10_06:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e000 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4198 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.4198 rm -f tmp.4198 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4198 rm -f tmp.4198 if ( wrfinput_d01_2015-06-10_06:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e000 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e000 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01_2015-06-10_06:00:00 + mv wrfbdy_d01_2015-06-10_06:00:00.e000 wrfbdy_d01_2015-06-10_06:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=06 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4286 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.4286 rm -f tmp.4286 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e001 set files = ( wrfinput_d01_2015-06-10_06:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e001 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4364 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.4364 rm -f tmp.4364 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4364 rm -f tmp.4364 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e001 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e001 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4449 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.4449 rm -f tmp.4449 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e002 set files = ( wrfinput_d01_2015-06-10_06:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e002 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4531 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.4531 rm -f tmp.4531 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4531 rm -f tmp.4531 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e002 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e002 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4616 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.4616 rm -f tmp.4616 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e003 set files = ( wrfinput_d01_2015-06-10_06:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e003 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4694 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.4694 rm -f tmp.4694 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4694 rm -f tmp.4694 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e003 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e003 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4779 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.4779 rm -f tmp.4779 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e004 set files = ( wrfinput_d01_2015-06-10_06:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e004 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4863 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.4863 rm -f tmp.4863 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4863 rm -f tmp.4863 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e004 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e004 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.4948 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.4948 rm -f tmp.4948 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e005 set files = ( wrfinput_d01_2015-06-10_06:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e005 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5024 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.5024 rm -f tmp.5024 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5024 rm -f tmp.5024 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e005 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e005 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5111 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.5111 rm -f tmp.5111 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e006 set files = ( wrfinput_d01_2015-06-10_06:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e006 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5192 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.5192 rm -f tmp.5192 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5192 rm -f tmp.5192 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e006 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e006 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5278 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.5278 rm -f tmp.5278 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e007 set files = ( wrfinput_d01_2015-06-10_06:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e007 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5355 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.5355 rm -f tmp.5355 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5355 rm -f tmp.5355 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e007 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e007 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5441 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.5441 rm -f tmp.5441 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e008 set files = ( wrfinput_d01_2015-06-10_06:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e008 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5519 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.5519 rm -f tmp.5519 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5519 rm -f tmp.5519 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e008 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e008 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5608 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.5608 rm -f tmp.5608 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e009 set files = ( wrfinput_d01_2015-06-10_06:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e009 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5814 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.5814 rm -f tmp.5814 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5814 rm -f tmp.5814 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e009 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e009 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5900 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5900 rm -f tmp.5900 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e010 set files = ( wrfinput_d01_2015-06-10_06:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e010 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5977 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5977 rm -f tmp.5977 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5977 rm -f tmp.5977 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e010 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e010 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_d01_2015-06-10_06:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e001 wrfbdy_d01_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e002 wrfbdy_d01_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e003 wrfbdy_d01_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e004 wrfbdy_d01_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e005 wrfbdy_d01_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e006 wrfbdy_d01_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e007 wrfbdy_d01_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e008 wrfbdy_d01_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e009 wrfbdy_d01_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e010 wrfbdy_d01_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + rm -rf perturb_chem_emiss_CORR_RT_CONST.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + LE_DATE=2015061007 + export LE_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6364 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_1016.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149305 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_07:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_07:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_07:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_07:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_07:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_07:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6579 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_24501.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149306 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/airnow_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 06 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=06 + export L_HH + D_DATE=2015061006 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=06 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=06 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=05 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=06 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061006.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061006.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/tolnet_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 06 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=06 + export L_HH + D_DATE=2015061006 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=06 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=06 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=05 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=06 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061006.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061006.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/prepbufr_met_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + echo 2015061006 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061006 obs_seq_prep_2015061006.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/combine_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/prepbufr_met_obs/obs_seq_prep_2015061006.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/prepbufr_met_obs/obs_seq_prep_2015061006.out ./obs_seq_MET_2015061006.out + FILE_LIST[1]=obs_seq_MET_2015061006.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/airnow_o3_obs/obs_seq_airnow_o3_2015061006.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/airnow_o3_obs/obs_seq_airnow_o3_2015061006.out ./obs_seq_AIR_O3_2015061006.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061006.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/tolnet_o3_obs/obs_seq_tolnet_o3_2015061006.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/tolnet_o3_obs/obs_seq_tolnet_o3_2015061006.out ./obs_seq_TOL_O3_2015061006.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061006.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061006.out\',\'obs_seq_AIR_O3_2015061006.out\',\'obs_seq_TOL_O3_2015061006.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=19800 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=23400 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 5 30 10 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=19800 which is Gregorian day: 2015 Jun 10 05:30:00 Excluding observations after: day=151370, sec=23400 which is Gregorian day: 2015 Jun 10 06:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061006.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061006.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061006.out inserted number 20000 of 20463 -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 20463 Number of obs really inserted : 20463 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061006.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 20463 Number of obs to be inserted : 892 Number of obs really inserted : 892 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 21355 Actual number of obs in the new seq file : 21355 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=19861 Gregorian day: 2015 Jun 10 05:31:01 Last obs time: day=151370, sec=23400 Gregorian day: 2015 Jun 10 06:30:00 Number of obs processed : 21355 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 300 obs RADIOSONDE_V_WIND_COMPONENT 300 obs RADIOSONDE_TEMPERATURE 231 obs RADIOSONDE_SPECIFIC_HUMIDITY 225 obs AIRCRAFT_U_WIND_COMPONENT 2 obs AIRCRAFT_V_WIND_COMPONENT 2 obs AIRCRAFT_TEMPERATURE 35 obs MARINE_SFC_U_WIND_COMPONENT 575 obs MARINE_SFC_V_WIND_COMPONENT 575 obs MARINE_SFC_TEMPERATURE 635 obs MARINE_SFC_SPECIFIC_HUMIDITY 170 obs LAND_SFC_U_WIND_COMPONENT 407 obs LAND_SFC_V_WIND_COMPONENT 407 obs LAND_SFC_TEMPERATURE 415 obs LAND_SFC_SPECIFIC_HUMIDITY 393 obs SAT_U_WIND_COMPONENT 7345 obs SAT_V_WIND_COMPONENT 7345 obs RADIOSONDE_SURFACE_ALTIMETER 5 obs MARINE_SFC_ALTIMETER 679 obs LAND_SFC_ALTIMETER 417 obs AIRNOW_O3 892 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 5 30 11 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061006.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/preprocess_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/combine_obs/obs_seq_comb_2015061006.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 3875_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 21600 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149382 + mv obs_seq.new obs_seq_comb_filtered_2015061006.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061006 -eq 2015061001 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/preprocess_obs/obs_seq_comb_filtered_2015061006.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/preprocess_obs/obs_seq_comb_filtered_2015061006.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e001 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e002 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e003 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e004 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e005 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e006 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e007 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e008 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e009 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e010 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e001 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10415 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_26699.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149385 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e002 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10419 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_25558.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149386 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e003 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10423 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_19117.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149387 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e004 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10427 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_11106.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149388 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e005 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10431 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_6577.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149389 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e006 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10435 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_2609.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149390 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e007 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10439 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_19420.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149391 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e008 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10443 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_1385.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149392 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e009 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10447 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_15665.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149393 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_wrf_e010 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10451 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_4552.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149394 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + true + [[ 2015061006 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061006 -ne 2015061001 ]] + [[ 2 != 0 ]] + INF_OUT_FILE_NAME_PRIOR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/prior_inflate_ic_new + export INF_OUT_FILE_NAME_PRIOR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/dart_filter/prior_inflate_ic_new prior_inflate_ic_old + [[ 0 != 0 ]] + echo 201506100530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 19800 + (( temp[1]=19800+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=19801 + export NL_FIRST_OBS_SECONDS + echo 201506100630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 23400 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=23400 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=12925 + JOBRND=3875_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=3875_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=10865 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 3875_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_19682.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149395 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11587 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_5305.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149400 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11798 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_19980.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149401 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12009 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_11636.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149402 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12220 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_12112.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149403 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12432 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_11794.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149404 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12644 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_13766.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149405 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12859 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_26789.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149406 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13077 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_1069.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149407 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13289 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_21727.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149408 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061005/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13501 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_10280.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149409 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e001 wrfbdy_d01_2015-06-10_06:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e002 wrfbdy_d01_2015-06-10_06:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e003 wrfbdy_d01_2015-06-10_06:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e004 wrfbdy_d01_2015-06-10_06:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e005 wrfbdy_d01_2015-06-10_06:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e006 wrfbdy_d01_2015-06-10_06:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e007 wrfbdy_d01_2015-06-10_06:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e008 wrfbdy_d01_2015-06-10_06:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e009 wrfbdy_d01_2015-06-10_06:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e010 wrfbdy_d01_2015-06-10_06:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/ensemble_mean_input ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + TRANDOM=12925 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e001 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e001 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e001 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e001 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e001 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e001 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15953 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_23655.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149500 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e002 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e002 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e002 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e002 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e002 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e002 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e002 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e002 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16057 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_15561.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149501 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e003 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e003 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e003 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e003 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e003 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e003 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e003 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e003 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16163 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_28909.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149502 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e004 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e004 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e004 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e004 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e004 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e004 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e004 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e004 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16265 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_142.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149503 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e005 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e005 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e005 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e005 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e005 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e005 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e005 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e005 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16367 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_25728.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149504 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e006 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e006 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e006 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e006 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e006 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e006 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e006 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e006 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16470 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_11609.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149505 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e007 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e007 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e007 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e007 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e007 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e007 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e007 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e007 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16573 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_8758.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149506 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e008 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e008 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e008 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e008 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e008 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e008 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e008 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e008 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16680 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_16602.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149507 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e009 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e009 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e009 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e009 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e009 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e009 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e009 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e009 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16783 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_656.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149508 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e010 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e010 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e010 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e010 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e010 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e010 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e010 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e010 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 07,07, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17007 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_6792.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149509 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/ensemble_mean_output ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/ensemble_mean_output + [[ 2015061006 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + export OUTPUT_DIR + rm -rf wrfout_d01_0001 wrfout_d01_0002 wrfout_d01_0003 wrfout_d01_0004 wrfout_d01_0005 wrfout_d01_0006 wrfout_d01_0007 wrfout_d01_0008 wrfout_d01_0009 wrfout_d01_0010 wrfout_d01_2015061006_mean wrfout_d01_2015061007_mean + P_DATE=2015061006 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_END_DATE=2015061007 + export P_END_DATE + [[ 2015061006 -le 2015061007 ]] + cut -c1-4 + echo 2015061006 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061006 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061006 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061006 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-10_06:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061006_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061007 ]] + echo 2015061007 + cut -c1-4 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061007 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061007 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061007 + P_HH=07 + export P_HH + P_FILE_DATE=2015-06-10_07:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061007_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061007 ]] + CYCLE_DATE=2015061007 + export CYCLE_DATE + [[ 2015061007 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061007 + export DATE + cut -c1-4 + echo 2015061007 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061007 + YY=15 + export YY + cut -c5-6 + echo 2015061007 + MM=06 + export MM + cut -c7-8 + echo 2015061007 + DD=10 + export DD + cut -c9-10 + echo 2015061007 + HH=07 + export HH + DATE_SHORT=15061007 + export DATE_SHORT + FILE_DATE=2015-06-10_07:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 -1 + 2> /dev/null + PAST_DATE=2015061006 + export PAST_DATE + cut -c1-4 + echo 2015061006 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061006 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061006 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061006 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061006 + PAST_HH=06 + export PAST_HH + PAST_FILE_DATE=2015-06-10_06:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + NEXT_DATE=2015061008 + export NEXT_DATE + cut -c1-4 + echo 2015061008 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061008 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061008 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061008 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061008 + NEXT_HH=08 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_08:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=07 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 07 + 0 )) + [[ 07 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=07 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 07 + 0 )) + D_DATE=2015061007 + export D_DATE + echo 2015061007 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 25200 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=25200 + export SEC_GREG + echo 2015061008 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 28800 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=28800 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100630 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100630 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100630 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100630 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100630 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100630 + ASIM_MIN_HH=06 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100730 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100730 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100730 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100730 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100730 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100730 + ASIM_MAX_HH=07 + export ASIM_MAX_HH + echo 201506100630 201506100630 + echo 201506100630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 23400 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=23400 + export ASIM_MIN_SEC_GREG + echo 201506100730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 27000 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=27000 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061007 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061007 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + END_DATE=2015061008 + export END_DATE + cut -c1-4 + echo 2015061007 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061007 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061007 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061007 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061007 + START_HOUR=07 + export START_HOUR + START_FILE_DATE=2015-06-10_07:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061008 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061008 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061008 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061008 + END_HOUR=08 + export END_HOUR + END_FILE_DATE=2015-06-10_08:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=07,07 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=08,08 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_07:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 23400 + (( temp[1]=23400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=23401 + export NL_FIRST_OBS_SECONDS + echo 201506100730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 27000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=27000 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061007 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=7 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=7 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=28800 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100630 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100730 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100630 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100630 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100630 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100630 + ASIM_MN_HH=06 + export ASIM_MN_HH + cut -c1-4 + echo 201506100730 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100730 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100730 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100730 + ASIM_MX_HH=07 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + E_DATE=2015061008 + export E_DATE + cut -c1-4 + echo 2015061008 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061008 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061008 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061008 + E_HH=08 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061007 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 2 + 2> /dev/null + P_END_DATE=2015061009 + export P_END_DATE + [[ 2015061007 -le 2015061009 ]] + cut -c1-4 + echo 2015061007 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061007 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061007 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061007 + P_HH=07 + export P_HH + P_FILE_DATE=2015-06-10_07:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_07:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061009 ]] + cut -c1-4 + echo 2015061008 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061008 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061008 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061008 + P_HH=08 + export P_HH + P_FILE_DATE=2015-06-10_08:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_08:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061009 ]] + cut -c1-4 + echo 2015061009 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061009 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061009 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061009 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-10_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_DATE=2015061010 + export P_DATE + [[ 2015061010 -le 2015061009 ]] + P_DATE=2015061007 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_END_DATE=2015061008 + export P_END_DATE + [[ 2015061007 -le 2015061008 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061007 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + cut -c1-4 + echo 2015061007 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061007 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061007 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061007 + L_START_HOUR=07 + export L_START_HOUR + cut -c1-4 + echo 2015061008 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061008 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061008 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061008 + L_END_HOUR=08 + export L_END_HOUR + cut -c1-4 + echo 2015061007 + cut -c1-4 + echo 2015061007 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061007 + cut -c5-6 + echo 2015061007 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061007 + cut -c7-8 + echo 2015061007 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061007 + cut -c9-10 + echo 2015061007 + NL_START_HOUR=07,07 + export NL_START_HOUR + cut -c1-4 + echo 2015061008 + cut -c1-4 + echo 2015061008 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061008 + cut -c5-6 + echo 2015061008 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061008 + cut -c7-8 + echo 2015061008 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061008 + cut -c9-10 + echo 2015061008 + NL_END_HOUR=08,08 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_07:00:00\',\'2015-06-10_07:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_08:00:00\',\'2015-06-10_08:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18591 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_3812.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149551 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061008 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061008 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + cut -c1-4 + echo 2015061008 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061008 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061008 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061008 + L_START_HOUR=08 + export L_START_HOUR + cut -c1-4 + echo 2015061009 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061009 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061009 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061009 + L_END_HOUR=09 + export L_END_HOUR + cut -c1-4 + echo 2015061008 + cut -c1-4 + echo 2015061008 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061008 + cut -c5-6 + echo 2015061008 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061008 + cut -c7-8 + echo 2015061008 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061008 + cut -c9-10 + echo 2015061008 + NL_START_HOUR=08,08 + export NL_START_HOUR + cut -c1-4 + echo 2015061009 + cut -c1-4 + echo 2015061009 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061009 + cut -c5-6 + echo 2015061009 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061009 + cut -c7-8 + echo 2015061009 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061009 + cut -c9-10 + echo 2015061009 + NL_END_HOUR=09,09 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_08:00:00\',\'2015-06-10_08:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_09:00:00\',\'2015-06-10_09:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18914 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_19453.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149552 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061008 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061007 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + cut -c1-4 + echo 2015061007 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061007 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061007 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061007 + L_START_HOUR=07 + export L_START_HOUR + cut -c1-4 + echo 2015061008 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061008 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061008 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061008 + L_END_HOUR=08 + export L_END_HOUR + cut -c1-4 + echo 2015061007 + cut -c1-4 + echo 2015061007 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061007 + cut -c5-6 + echo 2015061007 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061007 + cut -c7-8 + echo 2015061007 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061007 + cut -c9-10 + echo 2015061007 + NL_START_HOUR=07,07 + export NL_START_HOUR + cut -c1-4 + echo 2015061008 + cut -c1-4 + echo 2015061008 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061008 + cut -c5-6 + echo 2015061008 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061008 + cut -c7-8 + echo 2015061008 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061008 + cut -c9-10 + echo 2015061008 + NL_END_HOUR=08,08 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_07:00:00\',\'2015-06-10_07:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_08:00:00\',\'2015-06-10_08:00:00\'' + export NL_END_DATE + P_DATE=2015061007 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_END_DATE=2015061008 + export P_END_DATE + [[ 2015061007 -le 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_07:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_07:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26445.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19141 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18850.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149560 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20417.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19169 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12138.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149562 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31576.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19197 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18217.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149564 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9473.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19225 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11442.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149566 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6372.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19256 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6689.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149568 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7963.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19284 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11732.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149570 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19986.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19312 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29325.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149572 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7313.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19339 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24403.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149574 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14650.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19367 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20575.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149576 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24670.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19394 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29781.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149578 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_08:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_07:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_08:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18850.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19817 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149593 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12138.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19845 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25730.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149594 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18217.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19873 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19637.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149595 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11442.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19900 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18761.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149596 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6689.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19928 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24603.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149597 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11732.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19955 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25678.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149598 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29325.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19983 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21085.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149599 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24403.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20012 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15710.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149600 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20575.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20039 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1465.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149601 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29781.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=20067 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31024.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149602 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061008 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=12925 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20606 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15029.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149609 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=12925 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20939 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_22125.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149611 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=12925 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21150 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_3783.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149613 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=12925 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21361 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19947.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149615 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=12925 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21572 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1645.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149617 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=12925 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21789 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15002.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149618 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=12925 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22000 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12139.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149619 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=12925 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22211 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2961.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149620 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=12925 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22422 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_826.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149621 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=12925 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22638 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8890.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149623 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d02_2015-06-10_07:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d02_2015-06-10_07:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + LE_DATE=2015061008 + export LE_DATE + [[ 2015061007 -le 2015061008 ]] + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d02_2015-06-10_07:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061007 -eq 2015061007 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22713 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_31973.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149624 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_07:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d02_2015-06-10_08:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061008 -eq 2015061007 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24425 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_7062.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149633 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_08:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d02_2015-06-10_07:00:00 wrfinput_d02 + rm -rf GLOBAL_FINNv15_2014_MOZ4_7112014.txt GLOBAL_FINNv15_2015_MOZ4_11032016.txt GLOBAL_FINNv15_2016_MOZ4_11022016.txt GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=12925 + JOBRND=3875_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=3875_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26166 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_21001.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149707 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_07:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_07:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_07:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_07:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_08:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_08:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_08:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_08:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + LE_DATE=2015061008 + export LE_DATE + [[ 2015061007 -le 2015061008 ]] + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_07:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_07:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_08:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_08:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + echo 'AAA01 ' 2015061007 AAA01 2015061007 + echo 'AAA02 ' 2015061000 AAA02 2015061000 + [[ 2015061007 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_10:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 3875_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149714 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=07 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_07:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_07:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d01_2015-06-10_07:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 ./. + mv wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e000 + mv wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_d01_2015-06-10_07:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.26604 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_07:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.26604 rm -f tmp.26604 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e000 set files = ( wrfinput_d01_2015-06-10_07:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e000 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.26809 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.26809 rm -f tmp.26809 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00.e000 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.26809 rm -f tmp.26809 if ( wrfinput_d01_2015-06-10_07:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00.e000 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 echo wrfinput_d01_2015-06-10_07:00:00.e000 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00.e000 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 ln -s wrfinput_d01_2015-06-10_07:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e000 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e000 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_07:00:00.e000 wrfinput_d01_2015-06-10_07:00:00 + mv wrfbdy_d01_2015-06-10_07:00:00.e000 wrfbdy_d01_2015-06-10_07:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=07 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.26898 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_07:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.26898 rm -f tmp.26898 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e001 set files = ( wrfinput_d01_2015-06-10_07:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e001 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.26981 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.26981 rm -f tmp.26981 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.26981 rm -f tmp.26981 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e001 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e001 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27067 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_07:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.27067 rm -f tmp.27067 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e002 set files = ( wrfinput_d01_2015-06-10_07:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e002 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27144 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.27144 rm -f tmp.27144 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.27144 rm -f tmp.27144 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e002 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e002 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27230 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_07:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.27230 rm -f tmp.27230 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e003 set files = ( wrfinput_d01_2015-06-10_07:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e003 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27312 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.27312 rm -f tmp.27312 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.27312 rm -f tmp.27312 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e003 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e003 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27398 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_07:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.27398 rm -f tmp.27398 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e004 set files = ( wrfinput_d01_2015-06-10_07:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e004 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27475 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.27475 rm -f tmp.27475 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.27475 rm -f tmp.27475 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e004 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e004 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27561 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_07:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.27561 rm -f tmp.27561 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e005 set files = ( wrfinput_d01_2015-06-10_07:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e005 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27644 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.27644 rm -f tmp.27644 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.27644 rm -f tmp.27644 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e005 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e005 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27730 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_07:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.27730 rm -f tmp.27730 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e006 set files = ( wrfinput_d01_2015-06-10_07:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e006 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27808 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.27808 rm -f tmp.27808 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.27808 rm -f tmp.27808 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e006 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e006 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27895 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_07:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.27895 rm -f tmp.27895 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e007 set files = ( wrfinput_d01_2015-06-10_07:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e007 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27978 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.27978 rm -f tmp.27978 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.27978 rm -f tmp.27978 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e007 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e007 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28064 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_07:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.28064 rm -f tmp.28064 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e008 set files = ( wrfinput_d01_2015-06-10_07:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e008 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28262 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.28262 rm -f tmp.28262 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28262 rm -f tmp.28262 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e008 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e008 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28348 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_07:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.28348 rm -f tmp.28348 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e009 set files = ( wrfinput_d01_2015-06-10_07:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e009 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28430 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.28430 rm -f tmp.28430 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28430 rm -f tmp.28430 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e009 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e009 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28516 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28516 rm -f tmp.28516 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e010 set files = ( wrfinput_d01_2015-06-10_07:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e010 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28594 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28594 rm -f tmp.28594 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28594 rm -f tmp.28594 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e010 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e010 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_d01_2015-06-10_07:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e001 wrfbdy_d01_2015-06-10_07:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e002 wrfbdy_d01_2015-06-10_07:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e003 wrfbdy_d01_2015-06-10_07:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e004 wrfbdy_d01_2015-06-10_07:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e005 wrfbdy_d01_2015-06-10_07:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e006 wrfbdy_d01_2015-06-10_07:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e007 wrfbdy_d01_2015-06-10_07:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e008 wrfbdy_d01_2015-06-10_07:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e009 wrfbdy_d01_2015-06-10_07:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e010 wrfbdy_d01_2015-06-10_07:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + rm -rf perturb_chem_emiss_CORR_RT_CONST.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + LE_DATE=2015061008 + export LE_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061007 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_07:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_07:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_07:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_07:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_07:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_07:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_07:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28982 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_23833.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149716 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061007 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_08:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_08:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_08:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_07:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_08:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_08:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_08:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29193 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_8759.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149717 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_07:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/airnow_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 07 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=07 + export L_HH + D_DATE=2015061007 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=07 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=07 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=06 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=07 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061007.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061007.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/tolnet_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 07 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=07 + export L_HH + D_DATE=2015061007 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=07 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=07 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=06 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=07 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061007.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061007.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/prepbufr_met_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + echo 2015061006 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061007 obs_seq_prep_2015061007.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/combine_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/prepbufr_met_obs/obs_seq_prep_2015061007.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/prepbufr_met_obs/obs_seq_prep_2015061007.out ./obs_seq_MET_2015061007.out + FILE_LIST[1]=obs_seq_MET_2015061007.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/airnow_o3_obs/obs_seq_airnow_o3_2015061007.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/airnow_o3_obs/obs_seq_airnow_o3_2015061007.out ./obs_seq_AIR_O3_2015061007.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061007.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/tolnet_o3_obs/obs_seq_tolnet_o3_2015061007.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/tolnet_o3_obs/obs_seq_tolnet_o3_2015061007.out ./obs_seq_TOL_O3_2015061007.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061007.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061007.out\',\'obs_seq_AIR_O3_2015061007.out\',\'obs_seq_TOL_O3_2015061007.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=23400 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=27000 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 6 58 33 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=23400 which is Gregorian day: 2015 Jun 10 06:30:00 Excluding observations after: day=151370, sec=27000 which is Gregorian day: 2015 Jun 10 07:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061007.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061007.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061007.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 17118 Number of obs really inserted : 17118 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061007.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 17118 Number of obs to be inserted : 889 Number of obs really inserted : 889 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 18007 Actual number of obs in the new seq file : 18007 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=23461 Gregorian day: 2015 Jun 10 06:31:01 Last obs time: day=151370, sec=27000 Gregorian day: 2015 Jun 10 07:30:00 Number of obs processed : 18007 --------------------------------------------------------- AIRCRAFT_U_WIND_COMPONENT 3 obs AIRCRAFT_V_WIND_COMPONENT 3 obs AIRCRAFT_TEMPERATURE 21 obs MARINE_SFC_U_WIND_COMPONENT 549 obs MARINE_SFC_V_WIND_COMPONENT 549 obs MARINE_SFC_TEMPERATURE 609 obs MARINE_SFC_SPECIFIC_HUMIDITY 150 obs LAND_SFC_U_WIND_COMPONENT 28 obs LAND_SFC_V_WIND_COMPONENT 28 obs LAND_SFC_TEMPERATURE 28 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs SAT_U_WIND_COMPONENT 7224 obs SAT_V_WIND_COMPONENT 7224 obs MARINE_SFC_ALTIMETER 650 obs LAND_SFC_ALTIMETER 28 obs AIRNOW_O3 889 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 6 58 34 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061007.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/preprocess_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/combine_obs/obs_seq_comb_2015061007.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 3875_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 25200 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149749 + mv obs_seq.new obs_seq_comb_filtered_2015061007.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061007 -eq 2015061001 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/preprocess_obs/obs_seq_comb_filtered_2015061007.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/preprocess_obs/obs_seq_comb_filtered_2015061007.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_07:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_07:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_07:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_07:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_07:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_07:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_07:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_07:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_07:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_07:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e001 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e002 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e003 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e004 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e005 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e006 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e007 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e008 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e009 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e010 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e001 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=574 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_21093.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149780 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e002 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=578 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_29719.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149781 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e003 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=582 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_2368.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149782 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e004 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=586 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_8412.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149783 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e005 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=590 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_18361.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149784 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e006 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=594 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_21329.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149785 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e007 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=598 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_26436.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149786 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e008 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=602 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_16333.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149787 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e009 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=606 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_7045.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149788 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_wrf_e010 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=610 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_20487.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149789 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + true + [[ 2015061007 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061007 -ne 2015061001 ]] + [[ 2 != 0 ]] + INF_OUT_FILE_NAME_PRIOR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/prior_inflate_ic_new + export INF_OUT_FILE_NAME_PRIOR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/dart_filter/prior_inflate_ic_new prior_inflate_ic_old + [[ 0 != 0 ]] + echo 201506100630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 23400 + (( temp[1]=23400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=23401 + export NL_FIRST_OBS_SECONDS + echo 201506100730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 27000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=27000 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=12925 + JOBRND=3875_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=3875_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1050 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 3875_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_6019.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149793 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1954 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_9048.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149807 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2166 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_10121.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149808 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2388 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_32049.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149809 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2649 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_30966.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149810 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2879 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_4160.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149812 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3093 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_32369.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149813 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3323 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_1769.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149814 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3557 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_31754.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149815 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3776 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_13449.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149817 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_07:00:00 wrfinput_d01 + LL_DATE=2015061007 + export LL_DATE + LL_END_DATE=2015061007 + export LL_END_DATE + echo 2015061007 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061007 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061007 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061007 + cut -c9-10 + LL_HH=07 + export LL_HH + LL_FILE_DATE=2015-06-10_07:00:00 + export LL_FILE_DATE + [[ 2015061007 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3990 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_10983.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149818 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-10_07:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-10_07:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-10_07:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-10_07:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-10_07:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-10_07:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-10_07:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-10_07:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-10_07:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-10_07:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e001 wrfbdy_d01_2015-06-10_07:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_07:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e002 wrfbdy_d01_2015-06-10_07:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_07:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e003 wrfbdy_d01_2015-06-10_07:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_07:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e004 wrfbdy_d01_2015-06-10_07:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_07:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e005 wrfbdy_d01_2015-06-10_07:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_07:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e006 wrfbdy_d01_2015-06-10_07:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_07:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e007 wrfbdy_d01_2015-06-10_07:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_07:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e008 wrfbdy_d01_2015-06-10_07:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_07:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e009 wrfbdy_d01_2015-06-10_07:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_07:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_07:00:00.e010 wrfbdy_d01_2015-06-10_07:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_07:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/ensemble_mean_input ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061007 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061007 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061007 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061007 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061007 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061007 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061007 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061007 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061007 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061007 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/real/wrfinput_d02_2015-06-10_07:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + TRANDOM=12925 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e001 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e001 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e001 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e001 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e001 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e001 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e001 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e001 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6457 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_6428.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149893 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e002 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e002 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e002 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e002 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e002 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e002 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e002 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e002 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6560 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_4677.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149894 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e003 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e003 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e003 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e003 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e003 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e003 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e003 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e003 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6669 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_15031.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149895 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e004 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e004 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e004 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e004 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e004 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e004 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e004 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e004 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6771 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_13878.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149896 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e005 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e005 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e005 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e005 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e005 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e005 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e005 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e005 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6878 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_32089.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149898 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e006 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e006 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e006 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e006 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e006 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e006 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e006 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e006 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6980 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_29324.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149899 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e007 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e007 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e007 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e007 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e007 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e007 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e007 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e007 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7085 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_18988.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149900 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e008 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e008 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e008 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e008 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e008 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e008 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e008 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e008 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7193 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_1281.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149901 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e009 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e009 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e009 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e009 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e009 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e009 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e009 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e009 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7297 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_29956.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149902 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e010 wrfbiochemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e010 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e010 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e010 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e010 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e010 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061007 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e010 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e010 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/wrfout_d01_2015-06-10_07:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/update_bc/wrfbdy_d01_2015-06-10_07:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 07,07, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 08,08, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7399 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_7565.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149903 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/ensemble_mean_output ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/ensemble_mean_output + [[ 2015061007 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + export OUTPUT_DIR + rm -rf wrfout_d01_0001 wrfout_d01_0002 wrfout_d01_0003 wrfout_d01_0004 wrfout_d01_0005 wrfout_d01_0006 wrfout_d01_0007 wrfout_d01_0008 wrfout_d01_0009 wrfout_d01_0010 wrfout_d01_2015061007_mean wrfout_d01_2015061008_mean + P_DATE=2015061007 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_END_DATE=2015061008 + export P_END_DATE + [[ 2015061007 -le 2015061008 ]] + cut -c1-4 + echo 2015061007 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061007 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061007 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061007 + P_HH=07 + export P_HH + P_FILE_DATE=2015-06-10_07:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061007_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061008 ]] + echo 2015061008 + cut -c1-4 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061008 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061008 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061008 + P_HH=08 + export P_HH + P_FILE_DATE=2015-06-10_08:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061008_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061008 ]] + CYCLE_DATE=2015061008 + export CYCLE_DATE + [[ 2015061008 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061008 + export DATE + cut -c1-4 + echo 2015061008 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061008 + YY=15 + export YY + cut -c5-6 + echo 2015061008 + MM=06 + export MM + cut -c7-8 + echo 2015061008 + DD=10 + export DD + cut -c9-10 + echo 2015061008 + HH=08 + export HH + DATE_SHORT=15061008 + export DATE_SHORT + FILE_DATE=2015-06-10_08:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 -1 + 2> /dev/null + PAST_DATE=2015061007 + export PAST_DATE + cut -c1-4 + echo 2015061007 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061007 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061007 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061007 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061007 + PAST_HH=07 + export PAST_HH + PAST_FILE_DATE=2015-06-10_07:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + NEXT_DATE=2015061009 + export NEXT_DATE + cut -c1-4 + echo 2015061009 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061009 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061009 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061009 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061009 + NEXT_HH=09 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_09:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=08 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 08 + 0 )) + [[ 08 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=08 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 08 + 0 )) + D_DATE=2015061008 + export D_DATE + echo 2015061008 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 28800 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=28800 + export SEC_GREG + echo 2015061009 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 32400 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=32400 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100730 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100730 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100730 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100730 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100730 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100730 + ASIM_MIN_HH=07 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100830 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100830 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100830 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100830 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100830 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100830 + ASIM_MAX_HH=08 + export ASIM_MAX_HH + echo 201506100730 201506100730 + echo 201506100730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 27000 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=27000 + export ASIM_MIN_SEC_GREG + echo 201506100830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 30600 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=30600 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061008 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061008 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + END_DATE=2015061009 + export END_DATE + cut -c1-4 + echo 2015061008 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061008 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061008 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061008 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061008 + START_HOUR=08 + export START_HOUR + START_FILE_DATE=2015-06-10_08:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061009 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061009 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061009 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061009 + END_HOUR=09 + export END_HOUR + END_FILE_DATE=2015-06-10_09:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=08,08 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=09,09 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_07:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_08:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 27000 + (( temp[1]=27000+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=27001 + export NL_FIRST_OBS_SECONDS + echo 201506100830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 30600 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=30600 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061008 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=8 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=8 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=32400 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100730 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100830 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100730 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100730 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100730 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100730 + ASIM_MN_HH=07 + export ASIM_MN_HH + cut -c1-4 + echo 201506100830 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100830 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100830 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100830 + ASIM_MX_HH=08 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + E_DATE=2015061009 + export E_DATE + cut -c1-4 + echo 2015061009 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061009 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061009 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061009 + E_HH=09 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061008 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 2 + 2> /dev/null + P_END_DATE=2015061010 + export P_END_DATE + [[ 2015061008 -le 2015061010 ]] + cut -c1-4 + echo 2015061008 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061008 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061008 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061008 + P_HH=08 + export P_HH + P_FILE_DATE=2015-06-10_08:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_08:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061010 ]] + cut -c1-4 + echo 2015061009 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061009 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061009 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061009 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-10_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_DATE=2015061010 + export P_DATE + [[ 2015061010 -le 2015061010 ]] + cut -c1-4 + echo 2015061010 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061010 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061010 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061010 + P_HH=10 + export P_HH + P_FILE_DATE=2015-06-10_10:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_10:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_10:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + P_DATE=2015061011 + export P_DATE + [[ 2015061011 -le 2015061010 ]] + P_DATE=2015061008 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_END_DATE=2015061009 + export P_END_DATE + [[ 2015061008 -le 2015061009 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061008 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + cut -c1-4 + echo 2015061008 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061008 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061008 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061008 + L_START_HOUR=08 + export L_START_HOUR + cut -c1-4 + echo 2015061009 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061009 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061009 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061009 + L_END_HOUR=09 + export L_END_HOUR + cut -c1-4 + echo 2015061008 + cut -c1-4 + echo 2015061008 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061008 + cut -c5-6 + echo 2015061008 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061008 + cut -c7-8 + echo 2015061008 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061008 + cut -c9-10 + echo 2015061008 + NL_START_HOUR=08,08 + export NL_START_HOUR + cut -c1-4 + echo 2015061009 + cut -c1-4 + echo 2015061009 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061009 + cut -c5-6 + echo 2015061009 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061009 + cut -c7-8 + echo 2015061009 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061009 + cut -c9-10 + echo 2015061009 + NL_END_HOUR=09,09 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_08:00:00\',\'2015-06-10_08:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_09:00:00\',\'2015-06-10_09:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11067 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_7128.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149957 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061009 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061009 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + cut -c1-4 + echo 2015061009 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061009 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061009 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061009 + L_START_HOUR=09 + export L_START_HOUR + cut -c1-4 + echo 2015061010 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061010 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061010 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061010 + L_END_HOUR=10 + export L_END_HOUR + cut -c1-4 + echo 2015061009 + cut -c1-4 + echo 2015061009 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061009 + cut -c5-6 + echo 2015061009 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061009 + cut -c7-8 + echo 2015061009 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061009 + cut -c9-10 + echo 2015061009 + NL_START_HOUR=09,09 + export NL_START_HOUR + cut -c1-4 + echo 2015061010 + cut -c1-4 + echo 2015061010 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061010 + cut -c5-6 + echo 2015061010 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061010 + cut -c7-8 + echo 2015061010 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061010 + cut -c9-10 + echo 2015061010 + NL_END_HOUR=10,10 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_09:00:00\',\'2015-06-10_09:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_10:00:00\',\'2015-06-10_10:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11153 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_15653.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149974 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_DATE=2015061010 + export P_DATE + [[ 2015061010 -le 2015061009 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061008 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + cut -c1-4 + echo 2015061008 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061008 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061008 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061008 + L_START_HOUR=08 + export L_START_HOUR + cut -c1-4 + echo 2015061009 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061009 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061009 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061009 + L_END_HOUR=09 + export L_END_HOUR + cut -c1-4 + echo 2015061008 + cut -c1-4 + echo 2015061008 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061008 + cut -c5-6 + echo 2015061008 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061008 + cut -c7-8 + echo 2015061008 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061008 + cut -c9-10 + echo 2015061008 + NL_START_HOUR=08,08 + export NL_START_HOUR + cut -c1-4 + echo 2015061009 + cut -c1-4 + echo 2015061009 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061009 + cut -c5-6 + echo 2015061009 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061009 + cut -c7-8 + echo 2015061009 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061009 + cut -c9-10 + echo 2015061009 + NL_END_HOUR=09,09 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_08:00:00\',\'2015-06-10_08:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_09:00:00\',\'2015-06-10_09:00:00\'' + export NL_END_DATE + P_DATE=2015061008 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_END_DATE=2015061009 + export P_END_DATE + [[ 2015061008 -le 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_08:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_07:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_08:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6020.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11261 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27580.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149975 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26427.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11288 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26471.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149976 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18780.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11316 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3949.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149977 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29462.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11343 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21550.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149978 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3949.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11371 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20147.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149979 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15214.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11398 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31422.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149980 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20489.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11426 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20627.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149981 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27755.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11454 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28854.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149982 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20188.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11485 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4492.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149983 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23128.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11513 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9169.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149984 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_09:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_08:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_09:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27580.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11605 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13182.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149988 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26471.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11632 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23052.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149989 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3949.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11660 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4786.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149990 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21550.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11687 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27245.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149991 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20147.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11741 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5223.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149993 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31422.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11834 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11444.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149994 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20627.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11896 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28222.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149995 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28854.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11924 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26030.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149996 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4492.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11952 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6325.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149997 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9169.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11980 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_793.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149998 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_DATE=2015061010 + export P_DATE + [[ 2015061010 -le 2015061009 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=12925 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12236 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20904.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150005 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=12925 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12449 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_24434.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150006 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=12925 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12661 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30926.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150007 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=12925 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12876 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2052.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150009 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=12925 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13096 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19183.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150010 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=12925 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13308 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12621.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150011 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=12925 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13519 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2097.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150012 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=12925 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13735 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_109.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150013 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=12925 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13947 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26952.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150014 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=12925 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=14159 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13613.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150015 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d02_2015-06-10_08:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d02_2015-06-10_08:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + LE_DATE=2015061009 + export LE_DATE + [[ 2015061008 -le 2015061009 ]] + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d02_2015-06-10_08:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061008 -eq 2015061008 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=14234 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_27334.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150016 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_08:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d02_2015-06-10_09:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061009 -eq 2015061008 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15994 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_3750.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150099 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_09:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d02_2015-06-10_08:00:00 wrfinput_d02 + rm -rf GLOBAL_FINNv15_2014_MOZ4_7112014.txt GLOBAL_FINNv15_2015_MOZ4_11032016.txt GLOBAL_FINNv15_2016_MOZ4_11022016.txt GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=12925 + JOBRND=3875_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=3875_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17701 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_21583.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150171 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_08:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_08:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_08:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_08:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_09:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_09:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_09:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_09:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + LE_DATE=2015061009 + export LE_DATE + [[ 2015061008 -le 2015061009 ]] + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_08:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_08:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_09:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_09:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + echo 'AAA01 ' 2015061008 AAA01 2015061008 + echo 'AAA02 ' 2015061000 AAA02 2015061000 + [[ 2015061008 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_10:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 3875_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150178 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=08 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_08:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_08:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d01_2015-06-10_08:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 ./. + mv wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e000 + mv wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_d01_2015-06-10_08:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18279 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_08:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.18279 rm -f tmp.18279 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e000 set files = ( wrfinput_d01_2015-06-10_08:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e000 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18362 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.18362 rm -f tmp.18362 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00.e000 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.18362 rm -f tmp.18362 if ( wrfinput_d01_2015-06-10_08:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00.e000 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 echo wrfinput_d01_2015-06-10_08:00:00.e000 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00.e000 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 ln -s wrfinput_d01_2015-06-10_08:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e000 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e000 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_08:00:00.e000 wrfinput_d01_2015-06-10_08:00:00 + mv wrfbdy_d01_2015-06-10_08:00:00.e000 wrfbdy_d01_2015-06-10_08:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=08 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18452 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_08:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.18452 rm -f tmp.18452 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e001 set files = ( wrfinput_d01_2015-06-10_08:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e001 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18533 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.18533 rm -f tmp.18533 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.18533 rm -f tmp.18533 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e001 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e001 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18620 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_08:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.18620 rm -f tmp.18620 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e002 set files = ( wrfinput_d01_2015-06-10_08:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e002 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18819 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.18819 rm -f tmp.18819 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.18819 rm -f tmp.18819 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e002 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e002 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18906 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_08:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.18906 rm -f tmp.18906 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e003 set files = ( wrfinput_d01_2015-06-10_08:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e003 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18987 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.18987 rm -f tmp.18987 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.18987 rm -f tmp.18987 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e003 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e003 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19072 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_08:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.19072 rm -f tmp.19072 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e004 set files = ( wrfinput_d01_2015-06-10_08:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e004 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19149 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.19149 rm -f tmp.19149 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.19149 rm -f tmp.19149 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e004 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e004 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19235 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_08:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.19235 rm -f tmp.19235 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e005 set files = ( wrfinput_d01_2015-06-10_08:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e005 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19319 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.19319 rm -f tmp.19319 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.19319 rm -f tmp.19319 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e005 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e005 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19405 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_08:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.19405 rm -f tmp.19405 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e006 set files = ( wrfinput_d01_2015-06-10_08:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e006 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19482 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.19482 rm -f tmp.19482 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.19482 rm -f tmp.19482 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e006 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e006 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19568 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_08:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.19568 rm -f tmp.19568 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e007 set files = ( wrfinput_d01_2015-06-10_08:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e007 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19647 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.19647 rm -f tmp.19647 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.19647 rm -f tmp.19647 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e007 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e007 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19737 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_08:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.19737 rm -f tmp.19737 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e008 set files = ( wrfinput_d01_2015-06-10_08:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e008 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19814 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.19814 rm -f tmp.19814 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.19814 rm -f tmp.19814 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e008 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e008 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19900 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_08:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.19900 rm -f tmp.19900 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e009 set files = ( wrfinput_d01_2015-06-10_08:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e009 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19978 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.19978 rm -f tmp.19978 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.19978 rm -f tmp.19978 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e009 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e009 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20069 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.20069 rm -f tmp.20069 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e010 set files = ( wrfinput_d01_2015-06-10_08:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e010 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20268 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.20268 rm -f tmp.20268 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.20268 rm -f tmp.20268 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e010 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e010 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_d01_2015-06-10_08:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e001 wrfbdy_d01_2015-06-10_08:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e002 wrfbdy_d01_2015-06-10_08:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e003 wrfbdy_d01_2015-06-10_08:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e004 wrfbdy_d01_2015-06-10_08:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e005 wrfbdy_d01_2015-06-10_08:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e006 wrfbdy_d01_2015-06-10_08:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e007 wrfbdy_d01_2015-06-10_08:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e008 wrfbdy_d01_2015-06-10_08:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e009 wrfbdy_d01_2015-06-10_08:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e010 wrfbdy_d01_2015-06-10_08:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + rm -rf perturb_chem_emiss_CORR_RT_CONST.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + LE_DATE=2015061009 + export LE_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061008 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_08:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_08:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_08:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_08:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_08:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_08:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_08:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20659 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_31003.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150186 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061008 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_09:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_09:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_09:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_08:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_09:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_09:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_09:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20869 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_30384.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150187 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_08:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/airnow_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 08 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=08 + export L_HH + D_DATE=2015061008 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=08 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=08 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=07 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=08 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061008.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061008.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/tolnet_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 08 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=08 + export L_HH + D_DATE=2015061008 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=08 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=08 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=07 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=08 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061008.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061008.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/prepbufr_met_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061008 obs_seq_prep_2015061008.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/combine_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/prepbufr_met_obs/obs_seq_prep_2015061008.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/prepbufr_met_obs/obs_seq_prep_2015061008.out ./obs_seq_MET_2015061008.out + FILE_LIST[1]=obs_seq_MET_2015061008.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/airnow_o3_obs/obs_seq_airnow_o3_2015061008.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/airnow_o3_obs/obs_seq_airnow_o3_2015061008.out ./obs_seq_AIR_O3_2015061008.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061008.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/tolnet_o3_obs/obs_seq_tolnet_o3_2015061008.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/tolnet_o3_obs/obs_seq_tolnet_o3_2015061008.out ./obs_seq_TOL_O3_2015061008.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061008.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061008.out\',\'obs_seq_AIR_O3_2015061008.out\',\'obs_seq_TOL_O3_2015061008.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=27000 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=30600 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 8 36 3 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=27000 which is Gregorian day: 2015 Jun 10 07:30:00 Excluding observations after: day=151370, sec=30600 which is Gregorian day: 2015 Jun 10 08:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061008.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061008.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061008.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 2683 Number of obs really inserted : 2683 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061008.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 2683 Number of obs to be inserted : 864 Number of obs really inserted : 864 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 3547 Actual number of obs in the new seq file : 3547 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=27061 Gregorian day: 2015 Jun 10 07:31:01 Last obs time: day=151370, sec=30600 Gregorian day: 2015 Jun 10 08:30:00 Number of obs processed : 3547 --------------------------------------------------------- AIRCRAFT_U_WIND_COMPONENT 8 obs AIRCRAFT_V_WIND_COMPONENT 8 obs AIRCRAFT_TEMPERATURE 18 obs MARINE_SFC_U_WIND_COMPONENT 549 obs MARINE_SFC_V_WIND_COMPONENT 549 obs MARINE_SFC_TEMPERATURE 606 obs MARINE_SFC_SPECIFIC_HUMIDITY 149 obs LAND_SFC_U_WIND_COMPONENT 31 obs LAND_SFC_V_WIND_COMPONENT 31 obs LAND_SFC_TEMPERATURE 31 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs MARINE_SFC_ALTIMETER 648 obs LAND_SFC_ALTIMETER 31 obs AIRNOW_O3 864 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 8 36 3 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061008.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/preprocess_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/combine_obs/obs_seq_comb_2015061008.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 3875_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 28800 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150225 + mv obs_seq.new obs_seq_comb_filtered_2015061008.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061008 -eq 2015061001 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/preprocess_obs/obs_seq_comb_filtered_2015061008.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/preprocess_obs/obs_seq_comb_filtered_2015061008.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_08:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_08:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_08:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_08:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_08:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_08:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_08:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_08:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_08:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_08:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e001 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e002 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e003 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e004 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e005 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e006 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e007 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e008 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e009 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e010 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e001 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24711 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_14490.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150226 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e002 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24715 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_17087.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150227 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e003 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24719 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_17109.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150228 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e004 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24723 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_5589.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150229 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e005 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24727 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_29769.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150230 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e006 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24731 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_3706.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150231 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e007 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24735 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_7002.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150232 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e008 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24739 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_28763.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150233 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e009 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24743 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_31119.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150234 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_wrf_e010 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24747 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_21422.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150235 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + true + [[ 2015061008 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061008 -ne 2015061001 ]] + [[ 2 != 0 ]] + INF_OUT_FILE_NAME_PRIOR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/prior_inflate_ic_new + export INF_OUT_FILE_NAME_PRIOR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/dart_filter/prior_inflate_ic_new prior_inflate_ic_old + [[ 0 != 0 ]] + echo 201506100730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 27000 + (( temp[1]=27000+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=27001 + export NL_FIRST_OBS_SECONDS + echo 201506100830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 30600 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=30600 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=12925 + JOBRND=3875_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=3875_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25469 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 3875_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_29954.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150242 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26639 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_20766.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150247 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26850 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_23816.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150248 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27061 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_19813.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150249 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27273 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_29296.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150250 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27484 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_21671.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150251 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27695 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_19424.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150252 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27907 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_14442.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150253 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28119 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_31696.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150254 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28334 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_19465.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150255 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061007/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_08:00:00 wrfinput_d01 + LL_DATE=2015061008 + export LL_DATE + LL_END_DATE=2015061008 + export LL_END_DATE + echo 2015061008 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061008 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061008 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061008 + cut -c9-10 + LL_HH=08 + export LL_HH + LL_FILE_DATE=2015-06-10_08:00:00 + export LL_FILE_DATE + [[ 2015061008 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28548 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_20135.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150256 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-10_08:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-10_08:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-10_08:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-10_08:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-10_08:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-10_08:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-10_08:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-10_08:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-10_08:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-10_08:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e001 wrfbdy_d01_2015-06-10_08:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_08:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e002 wrfbdy_d01_2015-06-10_08:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_08:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e003 wrfbdy_d01_2015-06-10_08:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_08:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e004 wrfbdy_d01_2015-06-10_08:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_08:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e005 wrfbdy_d01_2015-06-10_08:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_08:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e006 wrfbdy_d01_2015-06-10_08:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_08:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e007 wrfbdy_d01_2015-06-10_08:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_08:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e008 wrfbdy_d01_2015-06-10_08:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_08:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e009 wrfbdy_d01_2015-06-10_08:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_08:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_08:00:00.e010 wrfbdy_d01_2015-06-10_08:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_08:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/ensemble_mean_input ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061008 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061008 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061008 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061008 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061008 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061008 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061008 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061008 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061008 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061008 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/real/wrfinput_d02_2015-06-10_08:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + TRANDOM=12925 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e001 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e001 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e001 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e001 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e001 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e001 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e001 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e001 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31048 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_29632.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150258 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e002 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e002 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e002 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e002 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e002 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e002 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e002 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e002 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31152 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_20600.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150268 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e003 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e003 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e003 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e003 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e003 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e003 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e003 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e003 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31257 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_16776.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150278 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e004 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e004 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e004 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e004 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e004 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e004 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e004 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e004 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31366 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_28313.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150287 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e005 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e005 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e005 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e005 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e005 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e005 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e005 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e005 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31469 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31274.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150292 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e006 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e006 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e006 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e006 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e006 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e006 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e006 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e006 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31572 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_551.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150293 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e007 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e007 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e007 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e007 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e007 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e007 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e007 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e007 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31678 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_9573.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150294 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e008 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e008 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e008 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e008 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e008 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e008 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e008 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e008 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31781 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_30125.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150295 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e009 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e009 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e009 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e009 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e009 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e009 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e009 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e009 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31887 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_11749.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150296 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e010 wrfbiochemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e010 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e010 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e010 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e010 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e010 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061008 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e010 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e010 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/wrfout_d01_2015-06-10_08:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/update_bc/wrfbdy_d01_2015-06-10_08:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 08,08, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31989 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_20553.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150297 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/ensemble_mean_output ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/ensemble_mean_output + [[ 2015061008 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + export OUTPUT_DIR + rm -rf wrfout_d01_0001 wrfout_d01_0002 wrfout_d01_0003 wrfout_d01_0004 wrfout_d01_0005 wrfout_d01_0006 wrfout_d01_0007 wrfout_d01_0008 wrfout_d01_0009 wrfout_d01_0010 wrfout_d01_2015061008_mean wrfout_d01_2015061009_mean + P_DATE=2015061008 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_END_DATE=2015061009 + export P_END_DATE + [[ 2015061008 -le 2015061009 ]] + cut -c1-4 + echo 2015061008 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061008 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061008 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061008 + P_HH=08 + export P_HH + P_FILE_DATE=2015-06-10_08:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061008_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061009 ]] + cut -c1-4 + echo 2015061009 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061009 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061009 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061009 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-10_09:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061009_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_DATE=2015061010 + export P_DATE + [[ 2015061010 -le 2015061009 ]] + CYCLE_DATE=2015061009 + export CYCLE_DATE + [[ 2015061009 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061009 + export DATE + cut -c1-4 + echo 2015061009 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061009 + YY=15 + export YY + cut -c5-6 + echo 2015061009 + MM=06 + export MM + cut -c7-8 + echo 2015061009 + DD=10 + export DD + cut -c9-10 + echo 2015061009 + HH=09 + export HH + DATE_SHORT=15061009 + export DATE_SHORT + FILE_DATE=2015-06-10_09:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -1 + 2> /dev/null + PAST_DATE=2015061008 + export PAST_DATE + cut -c1-4 + echo 2015061008 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061008 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061008 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061008 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061008 + PAST_HH=08 + export PAST_HH + PAST_FILE_DATE=2015-06-10_08:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + NEXT_DATE=2015061010 + export NEXT_DATE + cut -c1-4 + echo 2015061010 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061010 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061010 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061010 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061010 + NEXT_HH=10 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_10:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=09 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 09 + 0 )) + [[ 09 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=09 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 09 + 0 )) + D_DATE=2015061009 + export D_DATE + echo 2015061009 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 32400 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=32400 + export SEC_GREG + echo 2015061010 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 36000 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=36000 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100830 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100830 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100830 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100830 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100830 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100830 + ASIM_MIN_HH=08 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100930 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100930 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100930 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100930 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100930 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100930 + ASIM_MAX_HH=09 + export ASIM_MAX_HH + echo 201506100830 201506100830 + echo 201506100830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 30600 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=30600 + export ASIM_MIN_SEC_GREG + echo 201506100930 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 34200 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=34200 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061009 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061009 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + END_DATE=2015061010 + export END_DATE + cut -c1-4 + echo 2015061009 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061009 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061009 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061009 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061009 + START_HOUR=09 + export START_HOUR + START_FILE_DATE=2015-06-10_09:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061010 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061010 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061010 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061010 + END_HOUR=10 + export END_HOUR + END_FILE_DATE=2015-06-10_10:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=09,09 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=10,10 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_08:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_09:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 30600 + (( temp[1]=30600+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=30601 + export NL_FIRST_OBS_SECONDS + echo 201506100930 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 34200 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=34200 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061009 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=9 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=9 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=36000 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100830 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100930 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100830 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100830 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100830 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100830 + ASIM_MN_HH=08 + export ASIM_MN_HH + cut -c1-4 + echo 201506100930 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100930 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100930 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100930 + ASIM_MX_HH=09 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + E_DATE=2015061010 + export E_DATE + cut -c1-4 + echo 2015061010 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061010 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061010 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061010 + E_HH=10 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061009 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 2 + 2> /dev/null + P_END_DATE=2015061011 + export P_END_DATE + [[ 2015061009 -le 2015061011 ]] + cut -c1-4 + echo 2015061009 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061009 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061009 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061009 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-10_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_DATE=2015061010 + export P_DATE + [[ 2015061010 -le 2015061011 ]] + cut -c1-4 + echo 2015061010 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061010 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061010 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061010 + P_HH=10 + export P_HH + P_FILE_DATE=2015-06-10_10:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_10:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_10:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + P_DATE=2015061011 + export P_DATE + [[ 2015061011 -le 2015061011 ]] + cut -c1-4 + echo 2015061011 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061011 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061011 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061011 + P_HH=11 + export P_HH + P_FILE_DATE=2015-06-10_11:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_11:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d02.2015-06-10_11:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + P_DATE=2015061012 + export P_DATE + [[ 2015061012 -le 2015061011 ]] + P_DATE=2015061009 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_END_DATE=2015061010 + export P_END_DATE + [[ 2015061009 -le 2015061010 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061009 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + cut -c1-4 + echo 2015061009 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061009 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061009 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061009 + L_START_HOUR=09 + export L_START_HOUR + cut -c1-4 + echo 2015061010 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061010 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061010 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061010 + L_END_HOUR=10 + export L_END_HOUR + cut -c1-4 + echo 2015061009 + cut -c1-4 + echo 2015061009 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061009 + cut -c5-6 + echo 2015061009 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061009 + cut -c7-8 + echo 2015061009 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061009 + cut -c9-10 + echo 2015061009 + NL_START_HOUR=09,09 + export NL_START_HOUR + cut -c1-4 + echo 2015061010 + cut -c1-4 + echo 2015061010 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061010 + cut -c5-6 + echo 2015061010 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061010 + cut -c7-8 + echo 2015061010 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061010 + cut -c9-10 + echo 2015061010 + NL_END_HOUR=10,10 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_09:00:00\',\'2015-06-10_09:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_10:00:00\',\'2015-06-10_10:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7425 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_12000.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150333 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_DATE=2015061010 + export P_DATE + [[ 2015061010 -le 2015061010 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061010 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_END_DATE=2015061011 + export L_END_DATE + cut -c1-4 + echo 2015061010 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061010 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061010 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061010 + L_START_HOUR=10 + export L_START_HOUR + cut -c1-4 + echo 2015061011 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061011 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061011 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061011 + L_END_HOUR=11 + export L_END_HOUR + cut -c1-4 + echo 2015061010 + cut -c1-4 + echo 2015061010 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061010 + cut -c5-6 + echo 2015061010 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061010 + cut -c7-8 + echo 2015061010 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061010 + cut -c9-10 + echo 2015061010 + NL_START_HOUR=10,10 + export NL_START_HOUR + cut -c1-4 + echo 2015061011 + cut -c1-4 + echo 2015061011 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061011 + cut -c5-6 + echo 2015061011 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061011 + cut -c7-8 + echo 2015061011 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061011 + cut -c9-10 + echo 2015061011 + NL_END_HOUR=11,11 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_10:00:00\',\'2015-06-10_10:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_11:00:00\',\'2015-06-10_11:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 10,10, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 11,11, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=12925 + JOBRND=3875_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=3875_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7508 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_23481.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150334 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + P_DATE=2015061011 + export P_DATE + [[ 2015061011 -le 2015061010 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061009 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + cut -c1-4 + echo 2015061009 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061009 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061009 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061009 + L_START_HOUR=09 + export L_START_HOUR + cut -c1-4 + echo 2015061010 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061010 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061010 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061010 + L_END_HOUR=10 + export L_END_HOUR + cut -c1-4 + echo 2015061009 + cut -c1-4 + echo 2015061009 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061009 + cut -c5-6 + echo 2015061009 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061009 + cut -c7-8 + echo 2015061009 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061009 + cut -c9-10 + echo 2015061009 + NL_START_HOUR=09,09 + export NL_START_HOUR + cut -c1-4 + echo 2015061010 + cut -c1-4 + echo 2015061010 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061010 + cut -c5-6 + echo 2015061010 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061010 + cut -c7-8 + echo 2015061010 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061010 + cut -c9-10 + echo 2015061010 + NL_END_HOUR=10,10 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_09:00:00\',\'2015-06-10_09:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_10:00:00\',\'2015-06-10_10:00:00\'' + export NL_END_DATE + P_DATE=2015061009 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_END_DATE=2015061010 + export P_END_DATE + [[ 2015061009 -le 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_09:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_08:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_09:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18886.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7619 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22474.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150335 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27502.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7647 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11090.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150336 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24836.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7675 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11973.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150337 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22083.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7702 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21410.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150338 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13143.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7730 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32006.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150339 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28730.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7757 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21085.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150340 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19547.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7785 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22577.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150341 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23716.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7812 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27260.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150342 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2096.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7840 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17076.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150343 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 364484_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14309.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7867 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17576.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150344 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_DATE=2015061010 + export P_DATE + [[ 2015061010 -le 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_10:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_09:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_10:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22474.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8089 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16937.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150345 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11090.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8117 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18941.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150346 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11973.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8144 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13704.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150347 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21410.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8172 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11281.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150348 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32006.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8199 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7603.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150349 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21085.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8227 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14292.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150350 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22577.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8255 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14202.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150351 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27260.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8283 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21728.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150352 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17076.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8311 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3986.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150353 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 12925_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17576.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=12925_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=12925_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8342 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8339.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150354 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + P_DATE=2015061011 + export P_DATE + [[ 2015061011 -le 2015061010 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=12925 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8601 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8675.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150356 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=12925 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8832 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18664.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150357 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=12925 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9044 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_22189.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150358 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=12925 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9255 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8765.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150359 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=12925 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9470 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15464.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150360 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=12925 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9683 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_568.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150361 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=12925 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9896 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9888.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150362 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=12925 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10106 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28392.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150363 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=12925 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e009 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10320 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25802.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150364 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=12925 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e010 wrfinput_next + JOBRND=12925_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=12925_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10535 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 12925_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7390.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150365 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d02_2015-06-10_09:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d02_2015-06-10_09:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + LE_DATE=2015061010 + export LE_DATE + [[ 2015061009 -le 2015061010 ]] + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d02_2015-06-10_09:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061009 -eq 2015061009 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10730 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_9487.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150366 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_09:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d02_2015-06-10_10:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061010 -eq 2015061009 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=12925 + JOBRND=3875_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=3875_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12482 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 3875_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_5625.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150398 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_10:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d02_2015-06-10_09:00:00 wrfinput_d02 + rm -rf GLOBAL_FINNv15_2014_MOZ4_7112014.txt GLOBAL_FINNv15_2015_MOZ4_11032016.txt GLOBAL_FINNv15_2016_MOZ4_11022016.txt GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=12925 + JOBRND=3875_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=3875_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=14248 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_15375.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150472 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_09:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_09:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_09:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_09:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_10:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_10:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_10:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_10:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + LE_DATE=2015061010 + export LE_DATE + [[ 2015061009 -le 2015061010 ]] + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_09:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_09:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_10:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_10:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + echo 'AAA01 ' 2015061009 AAA01 2015061009 + echo 'AAA02 ' 2015061000 AAA02 2015061000 + [[ 2015061009 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_01:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 3875_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150474 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=09 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_09:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_09:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d01_2015-06-10_09:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 ./. + mv wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e000 + mv wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_d01_2015-06-10_09:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.14833 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_09:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.14833 rm -f tmp.14833 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e000 set files = ( wrfinput_d01_2015-06-10_09:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e000 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.14920 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.14920 rm -f tmp.14920 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00.e000 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.14920 rm -f tmp.14920 if ( wrfinput_d01_2015-06-10_09:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00.e000 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 echo wrfinput_d01_2015-06-10_09:00:00.e000 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00.e000 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 ln -s wrfinput_d01_2015-06-10_09:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e000 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e000 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_09:00:00.e000 wrfinput_d01_2015-06-10_09:00:00 + mv wrfbdy_d01_2015-06-10_09:00:00.e000 wrfbdy_d01_2015-06-10_09:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=09 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.15010 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_09:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.15010 rm -f tmp.15010 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e001 set files = ( wrfinput_d01_2015-06-10_09:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e001 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.15089 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.15089 rm -f tmp.15089 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.15089 rm -f tmp.15089 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e001 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e001 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.15179 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_09:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.15179 rm -f tmp.15179 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e002 set files = ( wrfinput_d01_2015-06-10_09:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e002 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.15256 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.15256 rm -f tmp.15256 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.15256 rm -f tmp.15256 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e002 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e002 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.15342 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_09:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.15342 rm -f tmp.15342 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e003 set files = ( wrfinput_d01_2015-06-10_09:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e003 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.15421 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.15421 rm -f tmp.15421 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.15421 rm -f tmp.15421 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e003 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e003 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.15511 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_09:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.15511 rm -f tmp.15511 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e004 set files = ( wrfinput_d01_2015-06-10_09:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e004 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.15712 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.15712 rm -f tmp.15712 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.15712 rm -f tmp.15712 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e004 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e004 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.15798 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_09:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.15798 rm -f tmp.15798 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e005 set files = ( wrfinput_d01_2015-06-10_09:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e005 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.15876 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.15876 rm -f tmp.15876 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.15876 rm -f tmp.15876 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e005 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e005 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.15967 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_09:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.15967 rm -f tmp.15967 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e006 set files = ( wrfinput_d01_2015-06-10_09:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e006 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16045 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.16045 rm -f tmp.16045 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.16045 rm -f tmp.16045 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e006 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e006 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16131 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_09:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.16131 rm -f tmp.16131 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e007 set files = ( wrfinput_d01_2015-06-10_09:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e007 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16210 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.16210 rm -f tmp.16210 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.16210 rm -f tmp.16210 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e007 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e007 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16301 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_09:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.16301 rm -f tmp.16301 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e008 set files = ( wrfinput_d01_2015-06-10_09:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e008 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16378 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.16378 rm -f tmp.16378 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.16378 rm -f tmp.16378 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e008 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e008 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16463 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_09:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.16463 rm -f tmp.16463 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e009 set files = ( wrfinput_d01_2015-06-10_09:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e009 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16542 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.16542 rm -f tmp.16542 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.16542 rm -f tmp.16542 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e009 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e009 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16633 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.16633 rm -f tmp.16633 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e010 set files = ( wrfinput_d01_2015-06-10_09:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e010 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.16709 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.16709 rm -f tmp.16709 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.16709 rm -f tmp.16709 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e010 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e010 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_d01_2015-06-10_09:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e001 wrfbdy_d01_2015-06-10_09:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e002 wrfbdy_d01_2015-06-10_09:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e003 wrfbdy_d01_2015-06-10_09:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e004 wrfbdy_d01_2015-06-10_09:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e005 wrfbdy_d01_2015-06-10_09:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e006 wrfbdy_d01_2015-06-10_09:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e007 wrfbdy_d01_2015-06-10_09:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e008 wrfbdy_d01_2015-06-10_09:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e009 wrfbdy_d01_2015-06-10_09:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e010 wrfbdy_d01_2015-06-10_09:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + rm -rf perturb_chem_emiss_CORR_RT_CONST.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + LE_DATE=2015061010 + export LE_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061009 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_09:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_09:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_09:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_09:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_09:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_09:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_09:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17230 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_1124.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150505 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + echo 2015061010 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061009 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_10:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_10:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_10:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_09:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_10:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_10:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_10:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=12925 + JOBRND=3875_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=3875_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17929 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_13113.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150507 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_09:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/airnow_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 09 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=09 + export L_HH + D_DATE=2015061009 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=09 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=09 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=08 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=09 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061009.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061009.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/tolnet_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 09 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=09 + export L_HH + D_DATE=2015061009 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=09 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=09 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=08 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=09 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061009.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061009.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/prepbufr_met_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + echo 2015061006 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061009 obs_seq_prep_2015061009.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/combine_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/prepbufr_met_obs/obs_seq_prep_2015061009.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/prepbufr_met_obs/obs_seq_prep_2015061009.out ./obs_seq_MET_2015061009.out + FILE_LIST[1]=obs_seq_MET_2015061009.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/airnow_o3_obs/obs_seq_airnow_o3_2015061009.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/airnow_o3_obs/obs_seq_airnow_o3_2015061009.out ./obs_seq_AIR_O3_2015061009.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061009.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/tolnet_o3_obs/obs_seq_tolnet_o3_2015061009.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/tolnet_o3_obs/obs_seq_tolnet_o3_2015061009.out ./obs_seq_TOL_O3_2015061009.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061009.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061009.out\',\'obs_seq_AIR_O3_2015061009.out\',\'obs_seq_TOL_O3_2015061009.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=30600 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=34200 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 10 51 36 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=30600 which is Gregorian day: 2015 Jun 10 08:30:00 Excluding observations after: day=151370, sec=34200 which is Gregorian day: 2015 Jun 10 09:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061009.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061009.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061009.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 2995 Number of obs really inserted : 2995 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061009.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 2995 Number of obs to be inserted : 905 Number of obs really inserted : 905 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 3900 Actual number of obs in the new seq file : 3900 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=32400 Gregorian day: 2015 Jun 10 09:00:00 Last obs time: day=151370, sec=34200 Gregorian day: 2015 Jun 10 09:30:00 Number of obs processed : 3900 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 120 obs RADIOSONDE_V_WIND_COMPONENT 120 obs RADIOSONDE_TEMPERATURE 99 obs RADIOSONDE_SPECIFIC_HUMIDITY 98 obs AIRCRAFT_U_WIND_COMPONENT 2 obs AIRCRAFT_V_WIND_COMPONENT 2 obs AIRCRAFT_TEMPERATURE 4 obs MARINE_SFC_U_WIND_COMPONENT 444 obs MARINE_SFC_V_WIND_COMPONENT 444 obs MARINE_SFC_TEMPERATURE 490 obs MARINE_SFC_SPECIFIC_HUMIDITY 92 obs LAND_SFC_U_WIND_COMPONENT 111 obs LAND_SFC_V_WIND_COMPONENT 111 obs LAND_SFC_TEMPERATURE 113 obs LAND_SFC_SPECIFIC_HUMIDITY 104 obs RADIOSONDE_SURFACE_ALTIMETER 3 obs MARINE_SFC_ALTIMETER 525 obs LAND_SFC_ALTIMETER 113 obs AIRNOW_O3 905 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 10 51 36 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061009.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/preprocess_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/combine_obs/obs_seq_comb_2015061009.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=12925 + JOBRND=3875_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 3875_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 3875_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 32400 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150513 + mv obs_seq.new obs_seq_comb_filtered_2015061009.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061009 -eq 2015061001 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/preprocess_obs/obs_seq_comb_filtered_2015061009.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/preprocess_obs/obs_seq_comb_filtered_2015061009.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_09:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_09:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_09:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_09:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_09:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_09:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_09:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_09:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_09:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_09:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e001 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e002 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e003 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e004 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e005 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e006 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e007 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e008 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e009 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e010 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e001 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21655 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_7712.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150514 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e002 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21659 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_7739.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150515 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e003 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21663 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_15079.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150516 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e004 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21667 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_9298.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150517 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e005 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21671 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_566.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150518 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e006 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21675 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_18036.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150519 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e007 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21679 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_14017.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150520 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e008 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21683 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_3125.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150521 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e009 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21687 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_15141.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150522 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_wrf_e010 + JOBRND=12925_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=12925_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21691 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_28985.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150523 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + true + [[ 2015061009 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061009 -ne 2015061001 ]] + [[ 2 != 0 ]] + INF_OUT_FILE_NAME_PRIOR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/prior_inflate_ic_new + export INF_OUT_FILE_NAME_PRIOR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/dart_filter/prior_inflate_ic_new prior_inflate_ic_old + [[ 0 != 0 ]] + echo 201506100830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 30600 + (( temp[1]=30600+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=30601 + export NL_FIRST_OBS_SECONDS + echo 201506100930 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 34200 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=34200 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=12925 + JOBRND=3875_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 3875_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=3875_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=22226 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 3875_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 3875_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_19137.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150525 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=23031 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_16635.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150601 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=23373 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_24020.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150602 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=23583 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_3767.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150603 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=23795 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_17840.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150604 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24007 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_27460.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150605 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24218 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_188.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150606 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24430 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_5043.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150607 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24645 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_24994.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150608 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24856 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_20570.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150609 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061008/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_09:00:00 wrfinput_d01 + LL_DATE=2015061009 + export LL_DATE + LL_END_DATE=2015061009 + export LL_END_DATE + echo 2015061009 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061009 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061009 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061009 + cut -c9-10 + LL_HH=09 + export LL_HH + LL_FILE_DATE=2015-06-10_09:00:00 + export LL_FILE_DATE + [[ 2015061009 -le 2015061001 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=12925_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=12925_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25067 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 12925_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_22893.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150610 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-10_09:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-10_09:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-10_09:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-10_09:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-10_09:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-10_09:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-10_09:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-10_09:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-10_09:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-10_09:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e001 wrfbdy_d01_2015-06-10_09:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_09:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e002 wrfbdy_d01_2015-06-10_09:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_09:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e003 wrfbdy_d01_2015-06-10_09:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_09:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e004 wrfbdy_d01_2015-06-10_09:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_09:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e005 wrfbdy_d01_2015-06-10_09:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_09:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e006 wrfbdy_d01_2015-06-10_09:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_09:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e007 wrfbdy_d01_2015-06-10_09:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_09:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e008 wrfbdy_d01_2015-06-10_09:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_09:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e009 wrfbdy_d01_2015-06-10_09:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_09:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_09:00:00.e010 wrfbdy_d01_2015-06-10_09:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_09:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/ensemble_mean_input ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061009 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061009 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061009 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061009 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061009 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061009 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061009 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061009 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061009 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061009 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/real/wrfinput_d02_2015-06-10_09:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr + TRANDOM=12925 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e001 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e001 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e001 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_10:00:00.e001 wrfbiochemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e001 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e001 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e001 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e001 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27564 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_30150.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150628 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e002 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e002 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e002 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_10:00:00.e002 wrfbiochemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e002 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e002 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e002 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e002 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27667 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_5961.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150629 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e003 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e003 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e003 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_10:00:00.e003 wrfbiochemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e003 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e003 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e003 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e003 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27774 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_4035.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150630 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e004 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e004 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e004 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_10:00:00.e004 wrfbiochemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e004 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e004 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e004 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e004 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27877 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_8668.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150631 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e005 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e005 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e005 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_10:00:00.e005 wrfbiochemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e005 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e005 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e005 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e005 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27980 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_14695.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150632 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e006 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e006 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e006 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_10:00:00.e006 wrfbiochemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e006 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e006 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e006 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e006 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28084 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31876.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150633 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e007 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e007 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e007 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_10:00:00.e007 wrfbiochemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e007 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e007 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e007 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e007 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28187 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_5367.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150634 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e008 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e008 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e008 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_10:00:00.e008 wrfbiochemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e008 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e008 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e008 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e008 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28294 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31325.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150635 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e009 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e009 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e009 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_10:00:00.e009 wrfbiochemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e009 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e009 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e009 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e009 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28397 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_24701.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150636 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e010 wrfbiochemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e010 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e010 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_10:00:00.e010 wrfbiochemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e010 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e010 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061009 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e010 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e010 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/dart_filter/wrfout_d01_2015-06-10_09:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour/2015061009/update_bc/wrfbdy_d01_2015-06-10_09:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 10,10, end_minute = 00,00, end_second = 00,00, interval_seconds = 3600, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60,60, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=12925_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 12925_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=12925_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28500 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 12925_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 12925_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_20122.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150637 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 12925